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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtggttctaggacttaatgtttcaagcacaccgtttatctgttctgttattaatcttgatagaaatcggcacacttacaaaatatctgattgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTGGCATTTAGGCTTTTCCACGGGAGTGATGGTGTAGTACCCTTATCTGACA

Basic information

species Glycine max
transcript GLYMA10G35680.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35680.3 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os10g43060.1 (Oryza sativa), 3'ss of exon 2
---gtggttctaggacttaatgtttcaagcacaccgtttatctgttctgttattaatct-tgatagaaatcggcacacttacaaaatatctgattgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTGGCATTTAGGCTTTTCCACGGGAGTGATGGTGTAGTACCCTTATCTGACA
        | ||      |   |   || |  | ||  | | | |       |  || | |  | ||   |    | |    | |  || || |  ||    |||   | ||||  || |||||||||||||||||||| |||||||||||  |||||||| |  ||||||| ||    ||||| || || ||  | ||  |  
gtaagccctttaccttccatcctcataatcttatcgcatgtttctgaaaaattggatgtattgtggatgccattgctcaactatatcatttgctgcttgtaaagGCAAGAGGAGACAAGGGTCCAATTTTTGAAGATGGACCCAATTTTGACATGGCATTTCGAGTTTTCCATGGCCAAGATGGGGTTGTTCCACTTTCACATG

upper sequence: GLYMA10G35680.3 (Glycine max), 3'ss of exon 2
lower sequence: AT4G25030.1 (Arabidopsis thaliana), 3'ss of exon 2
gtggttctaggacttaatgtttcaagcacaccgtttatctgttctgttattaatcttgatagaaatcggcacacttacaaaatatctgattgt-tactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTGGCATTTAGGCTTTTCCACGGGAGTGATGGTGTAGTACCCTTATCTGACA
                       ||| | ||||| | |  ||||  |     || |||| |    |    | | |   |   | ||| ||  | ||   |||   | |  |  ||||| || || ||||||||||||||||||||||||  ||| |||||||||||||| ||    ||||| || || ||  | |||||||
---------------------gtaagta-accgtctgttggttcact---ccatattgacatttctta-tagattctgatcttgtctcatcatatatatagGCAAGAGCTGGGAAAGGACCTATATTTGAAGATGGTCCCAATTTTGATACGGCGTTTAGGCTTTTCCATGGCCAAGATGGAGTTGTCCCTCTCTCTGACA

upper sequence: GLYMA10G35680.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g03990.t01 (Vitis vinifera), 3'ss of exon 2
gtggttctagga--ctta-atgttt-caagcacaccgtttatctgttctgttattaatcttgatagaaatcggcacactta-caaaatatctgattgt-tactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTGGCATTTAGGCTTTTCCACGGGAGTGATGGTGTAGTACCCTTATCTGACA
    ||||  ||  |||| ||| || ||    ||    | |  || |   ||   |      ||   |||||| |||| ||   | || |||   | | | | ||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||  |||| || || || ||  | ||||  |
----ttctgtgatgcttatatgattgcagaggcatgcctgacttggtgaattgccaga--aaattttaatcggaacacctaatgacatttctctctttctgcacagGTGCGTGGAGCAAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATATGGCATTCAGGGTTTTCCATGGCCGTGACGGGGTTGTTCCACTTTCTGGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401008|gb|BM177790.1|BM177790
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|192330388|gb|FK021175.1|FK021175
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|207836679|gb|GD807012.1|GD807012
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTACCCAATTTTGATTT
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGT-CCCAATTTTGATTT
EST: gi|21678119|gb|BQ630461.1|BQ630461
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|192306573|gb|FG997243.1|FG997243
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|192326462|gb|FK017719.1|FK017719
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|21678189|gb|BQ630540.1|BQ630540
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|192307013|gb|FK002679.1|FK002679
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|7686557|gb|AW757205.1|AW757205
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
EST: gi|151412720|gb|EV282532.1|EV282532
EST:     ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCT                         GTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG
genomic: ATGAGCCTACTAACTTCTCATTCTTTTCACCTTTGGCTTTACCAATGCCTgtaagttatc ... tgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttattaatcttgatagaaatcggcacacttacaaaatatctgattgttactcagGTTCGTGGAGCTAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGATTTGGCATTTAGGCTTTTCCACGGGAGTGATGGTGTAGTACCCTTATCTGACA
                             ttacaaaatat  TA-rich tract