Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttttacaatgaaaatgcatatctattaaactttatttcaaacgcttaaaattgaagtcttttgctttgggtatgacttttgatatgctttttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTCTAACTACAATCCATGGTATAGACTAGAGAAGGCATCAAGGCCTTTCCAT

Basic information

species Glycine max
transcript GLYMA10G35650.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6726461|gb|AW310815.1|AW310815
EST:     TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTG                         GTGGAGGTGGTTACATGACAGGAGAGAACAGNTTTATTAGNTGAGAAGCTC
genomic: TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaa ... tttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC
EST: gi|192301741|gb|FG994421.1|FG994421
EST:     TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTG                         GTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC
genomic: TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaa ... tttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC
EST: gi|58020466|gb|CX707208.1|CX707208
EST:     TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTCCCATTG                         GTGGAGGTGGTTCCATGCCAGGAGAGACCAGCTTTATTAGCTGAGAAGCTC
genomic: TATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaa ... tttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC
EST: gi|6726259|gb|AW310613.1|AW310613
EST:     GTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTG                         GTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC
genomic: GTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaa ... tttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaaattgaagtcttttgctttgggtatgacttttgatatgctttttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTCTAACTACAATCCATGGTATAGACTAGAGAAGGCATCAAGGCCTTTCCAT
                                ttttgat  putative branch site (score: 4)
                                        tgctttttccc  CT-rich tract
                                ttttgatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttttacaatgaaaatgcatatctattaaactttatttcaaacgcttaaaattgaagtcttttgctttgggtatgacttttgatatgctttttcccacagGTGGAGGTGGTTACATGACAGGAGAGAACAGCTTTATTAGCTGAGAAGCTCTAACTACAATCCATGGTATAGACTAGAGAAGGCATCAAGGCCTTTCCAT

- - - caatgaa
- - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatatgc