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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtatttttacataacttgttttactctctaccactctaccttttggtggtttttaactattgtgttttctaatgggcgtttgtaccttcaagctgcagCTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAAAGCTTCAAAATGGCAG

Basic information

species Glycine max
transcript GLYMA10G35490.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208178143|gb|GD978740.1|GD978740
EST:     ATTCAAACCCCAGAATCATTTTAGTTTCCAGAGAAATTTTCGCAGCAATG                         CTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAA
genomic: ATTCAAACCCCAGAATCATTTTAGTTTCCAGAGAAATTTTCACAGCAATGgtctgttcta ... caagctgcagCTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAA
EST: gi|208262415|gb|GE059174.1|GE059174
EST:     ATTCAAACCCCAGAATCATTTTAGTTTCCAGAGAAATTTTCACAGCAATG                         CTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAA
genomic: ATTCAAACCCCAGAATCATTTTAGTTTCCAGAGAAATTTTCACAGCAATGgtctgttcta ... caagctgcagCTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAA
EST: gi|207746033|gb|GD721077.1|GD721077
EST:     ATTCAAACCCCAGAATCATTTTAGTTTCCAGAGAAATTTTCACAGCAATG                         CTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAA
genomic: ATTCAAACCCCAGAATCATTTTAGTTTCCAGAGAAATTTTCACAGCAATGgtctgttcta ... caagctgcagCTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAA
EST: gi|151394480|gb|EV264351.1|EV264351
EST:     ATTCAAACCCCAGAATCATTTTAGTTTCCAGAGAAATTTTCACAGCAATG                         CTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAA
genomic: ATTCAAACCCCAGAATCATTTTAGTTTCCAGAGAAATTTTCACAGCAATGgtctgttcta ... caagctgcagCTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtggtttttaactattgtgttttctaatgggcgtttgtaccttcaagctgcagCTTCTGCATCTGCTACTGCTGTGCCATATCTAGACAAGACAGATTTTCTAAAGCTTCAAAATGGCAG
                       ttctaat  putative branch site (score: 2)
                                       taccttc  putative PPT
      tttttaactattgt  TA-rich tract