1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttgaaatcatttgtttttatttctttccaatggattgtgctattaaagcatcatttacggaatttgcaaatcttatatttcaaagagctgtcctttcagGTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCGCCCACTGAAGTAGAACATCTAGCAATAGTCAAAGCTGCTGCAACTTCTG
species | Glycine max |
transcript | GLYMA10G35450.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGATTTGACTTCTCACATTATTAAGGTGTACTTGACATTGAAG GTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCGEST: gi|14259278|gb|BG882186.1|BG882186
genomic: ATTGATTTGACTTCTCACATTATTAAGGTGTACTTGACATTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCG
EST: ATTGATTTGACTTCTCACATTATTAAGGTGTACTTGACATTGAAG GTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCGEST: gi|6566834|gb|AW234466.1|AW234466
genomic: ATTGATTTGACTTCTCACATTATTAAGGTGTACTTGACATTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCG
EST: ATTGATTTGACTTCTCACATTATTAAGGTGTACTTGACATTGAAG GTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCGEST: gi|298163231|gb|HO011964.1|HO011964
genomic: ATTGATTTGACTTCTCACATTATTAAGGTGTACTTGACATTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCG
EST: ATTGATTTGACTTCTCACATTATTATGGTGTACTTGACATTGAAT GTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCG
genomic: ATTGATTTGACTTCTCACATTATTAAGGTGTACTTGACATTGAAGgtaacctctc ... gtcctttcagGTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCG
aaagcatcatttacggaatttgcaaatcttatatttcaaagagctgtcctttcagGTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCGCCCACTGAAGTAGAACATCTAGCAATAGTCAAAGCTGCTGCAACTTCTG
ctgtcctttc CT-rich tract
aaatcttatatttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgaaatcatttgtttttatttctttccaatggattgtgctattaaagcatcatttacggaatttgcaaatcttatatttcaaagagctgtcctttcagGTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCGCCCACTGAAGTAGAACATCTAGCAATAGTCAAAGCTGCTGCAACTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC