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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaattacatgtgtagccttatagttctgatgatgcttgcatggtggattatgctctgtgtaacacaagttttgcaaattgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTTTTTGCTCTTGAA

Basic information

species Glycine max
transcript GLYMA10G35320.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207787687|gb|GD761485.1|GD761485
EST:     AGTGATTCTTTTGCTCAG                         GATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
genomic: AGTGATTCTTTTGCTCAGgttaattaca ... tgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
EST: gi|298195047|gb|HO043575.1|HO043575
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACTGGGGGTGCATTGGTGCCAGAGGAAGGACCTGATTATCCACTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattaca ... tgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
EST: gi|7692581|gb|AW760684.1|AW760684
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattaca ... tgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
EST: gi|9564725|gb|BE474234.1|BE474234
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattaca ... tgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
EST: gi|209716152|gb|BW662337.1|BW662337
EST:     TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAG                         GATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT
genomic: TCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattaca ... tgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgcatggtggattatgctctgtgtaacacaagttttgcaaattgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTTTTTGCTCTTGAA
                       gtgtaac  putative branch site (score: 3)
                                         aaattgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttaattacatgtgtagccttatagttctgatgatgcttgcatggtggattatgctctgtgtaacacaagttttgcaaattgtactctagGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTTTTTGCTCTTGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG