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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaagaagcatgtaaaaaagttgaatttttttaccaaccagttgttgtgaagtgcatcaattgaatattcatgctattgttgtaattgatgatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATTTTTGGGCACACCCTCATTGTCAAGACTAAGCAGTTCTTTCCTTTCTACATCA

Basic information

species Glycine max
transcript GLYMA10G35280.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g04660.t01 (Vitis vinifera), 3'ss of exon 3
-----tcaagaagcatgtaaaaaagttgaatttttttacca-accagttgttgtgaagtgcatcaattgaatattcatgctattgttgtaattgatgatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATTTTTGGGCACACCCTCATTGTCAAGACTAAGCAGTTCTTTCCTTTCTACATCA
     ||| ||    |  | ||||    ||| |  |    | |  |    ||   | | | ||| |   |||  ||     |||||| |   |  | |  ||||||||||||||||||||| || |||||||| || || ||||  ||||| ||||||||||| || ||  |||||||| || ||||||| || |||||  |||||
ataggtcatgagttcttgataaaatcccaatgtaatggttatattaaaattttcaatgcgaatctac-aaatcctc-----attgttttttctacttacatttcagGCAATCTATTGATCTGTACAGTAGTGTACCGTCTCCAAGTATTGGGTTTTTGGGCACTCCGTCCCTGTCAAGATTAGGCAGTTCATTTCTTTCCTCATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4297711|gb|AI442657.1|AI442657
EST:     CCACAGAGAAAGCCCAGTTCTTACAACATCTCATGGCCTCAGAGTTACAG                         GCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGAT
genomic: CCACAGAGAAAGCCCAGTTCTTACAACATCTCATGGCCTCAGAGTTACAGgtcaacccct ... gatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgaagtgcatcaattgaatattcatgctattgttgtaattgatgatgtttcagGCAATCTATTGATCTATATAGTAGTGTGCCATCACCAAACATTGGATTTTTGGGCACACCCTCATTGTCAAGACTAAGCAGTTCTTTCCTTTCTACATCA
                                      aattgat  putative branch site (score: 4)
          atcaattgaatatt  TA-rich tract