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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtcagttgcatctcggcaatggatgttactttgagcttcatttttgcatttgagttcctgaaggatttattttgacctttttgtctggttgctgaatttgatctagGATCATCACTGCTTGTGGATAAATAACTGTGTTGGCTATTGGAATTATAAGACATTCTTTGTTTTTGTATTCTATGCCACCATGGCAAGTATTTATTCTA

Basic information

species Glycine max
transcript GLYMA10G35270.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35270.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0019g04670.t01 (Vitis vinifera), 3'ss of exon 2
gtaggtcagttgcatctcggcaatggatgttactttgagcttcatttttgcatttgagttcctgaaggatttattttgacctttttgtctggttgctgaatttgatctagGATCATCACTGCTTGTGGATAAATAACTGTGTTGGCTATTGGAATTATAAGACATTCTTTGTTTTTGTATTCTATGCCACCATGGCAAGTATTTATTCTA
          ||  |    | |||| ||     | ||| ||||| || ||    | |     ||||   || |||    | || || ||      || || |  ||  ||||||| ||||| ||||||||||| || |||||||| |||||||| |||||| | ||  |  |  |||| || ||||| || || | ||| ||  | ||||
-------gtatgtgtgctag-aatgaattgatttatgatcttcagttatgaccataa----ttgaatttttaattgatgctttcttctca---cactaaaatcaatgcagGATCACCACTGTTTGTGGATAAACAATTGTGTTGGTTATTGGAACTATAAGGCCTTTGTGATGCTTGTCTTATATGCAACTATTGGAAGCATCCACTCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttcctgaaggatttattttgacctttttgtctggttgctgaatttgatctagGATCATCACTGCTTGTGGATAAATAACTGTGTTGGCTATTGGAATTATAAGACATTCTTTGTTTTTGTATTCTATGCCACCATGGCAAGTATTTATTCTA
             atttattttga  TA-rich tract