Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattataatcgcttctaaatttctcctttttttttgttgctcgtacgaagaaaattgaagttctgttccgctacgtgatttcaaatcaaattttgatcatcgactattttgatttttattgctttttcactatagcagtactgaacactgagttcgttagagttaatgattttcatccaacacgcgttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTCTCGCTTATCATACAGACATCCATTCTCAAG

Basic information

species Glycine max
transcript GLYMA10G35210.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193720828|gb|FK658992.1|FK658992
EST:     GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT                         GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: gi|207680094|gb|GD663708.1|GD663708
EST:     GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT                         GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: gi|213611506|gb|DB960786.1|DB960786
EST:     GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT                         GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: gi|193630879|gb|FK580512.1|FK580512
EST:     GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT                         GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAG
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAG
EST: gi|193520537|gb|FK475546.1|FK475546
EST:     GGAGCATTCGCAAAAAAGAGCTCCTCAACATCCTCAAGTAAT                         GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCT
genomic: GGAGCATTCGCAAAAA-GAGCTCCTCAACATCCTCAAG-AATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCT
EST: gi|193329364|gb|FK296546.1|FK296546
EST:     GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT                         GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: gi|193643308|gb|FK590791.1|FK590791
EST:     GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT                         GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: gi|193528642|gb|FK486860.1|FK486860
EST:     GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAAT                         GTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
genomic: GGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
EST: gi|193510551|gb|FK468057.1|FK468057
EST:     AACATCCTCAAGAAT                         GTTCGAGGAAAGAAGNGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC
genomic: AACATCCTCAAGAATgtaattataa ... gttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaacactgagttcgttagagttaatgattttcatccaacacgcgttgttgtagGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTCTCGCTTATCATACAGACATCCATTCTCAAG
                    agttaat  putative branch site (score: 4)
                      ttaatgattttcat  TA-rich tract