Sequence
atgc intronic sequence ATGC exonic sequence...tccattactttctttgtcatatgccagtgttctgccacagaaacatgcaagctaccagcagattctatcaccctctcttatttggtggtttattgtttagCACAGTGAACCTGGATGGTTTTAAACCAAATCTAGAGACTCATCTTCTTCCTTTACTCTCAATGAAACCTGAGGACACTTCTTTGGAATCCAACTCCAAG
Basic information
species | Glycine max |
transcript | GLYMA10G34800.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G34800.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G04710.1 (Arabidopsis thaliana), 3'ss of exon 3
----------tccattactttcttt------gtcatatgccagtgt-tctgccacagaaacatgcaagctaccagcagattctatcaccctctcttatttggtggtttattgtttagCACAGTGAACCTGGATGGTTTTAAACCAAATCTAGAGACTCATCTTCTTCCTTTACTCTCAATGAAACCTGAGGACACTTCTTTGGAATCCAACTCCAAG
| ||| | || | | || || || | || | ||||| | | | | | || ||| || | || || | || |||||||||||||||||||| ||||| |||||||||||| | ||||| || ||| |||| |||| ||| ||| | || || | || || ||||| |||
gtaaatttctttcatgagcttgtctagtgaagttttaggctaatgcatttgccatcaagtggagtta--tgttttgaagctcattcatgctgttttgttct-tcgtgtattgtttagCACAGTGAACAGTGATGGATTTAAACCAAATTTGGAGACCCAACTTGTTCCGCTACTGGCAACAAAATCAGATGAATCCTCAGCAGAGTCCAAGGACAAA
upper sequence: GLYMA10G34800.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0106g00700.t01 (Vitis vinifera), 3'ss of exon 4
-tccattactttctttgtcatatg-ccagtgttctgccacagaaacatgcaagctaccagcagattctatcaccctctcttatttgg---tggtttattgtttagCACAGTGAACCTGGATGGTTTTAAACCAAATCTAGAGACTCATCTTCTTCCTTTACTCTCAATGAAACCTGAGGACACTTCTTTGGAATCCAACTCCAAG
| | ||| |||| |||||| || || | || | | ||| | | | | | | || || || | ||| |||||||||||||||||| |||||| |||||||||||||| |||||||| || |||| |||||| ||| |||| |||||| | |||| || ||||| ||
atttaaaactggcttttacatatggtttgtaaattgtta---gtttctgttggttgcca--aatctgtgtgctcacttgtttttcggccttcttttgttgtttagCACAGTGAACAAGGATGGATTTAAACCAAATCTTGAGACTCACCTAATTCCATTACTCGCAACAAAACTTGAGGAAGCATCTTCAGAGTCCAAAGAGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaagctaccagcagattctatcaccctctcttatttggtggtttattgtttagCACAGTGAACCTGGATGGTTTTAAACCAAATCTAGAGACTCATCTTCTTCCTTTACTCTCAATGAAACCTGAGGACACTTCTTTGGAATCCAACTCCAAG
tttattgttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccattactttctttgtcatatgccagtgttctgccacagaaacatgcaagctaccagcagattctatcaccctctcttatttggtggtttattgtttagCACAGTGAACCTGGATGGTTTTAAACCAAATCTAGAGACTCATCTTCTTCCTTTACTCTCAATGAAACCTGAGGACACTTCTTTGGAATCCAACTCCAAG
- - - - - - - - - -tatgcca
- - - - - - - - - - - - - - - -ctgccac
- - - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -accagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggtt