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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggatagcatgagttttattcaaaccttaatactggattatttttcaatcaatataaatagttatatggttataaaatttagGTGTCAAGCAAGATGGAAGTGCTTCTCACCTTTTCCATCGAGCAATCAAGGCTTATAATACTGGCAGTCGAAAGCGTCGAAAGATATGTGGTCAGGATTT

Basic information

species Glycine max
transcript GLYMA10G34730.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34730.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os06g15690.1 (Oryza sativa), 3'ss of exon 3
----------------gtggatagcatgagttttattcaaacct-taatactggattatttttcaatcaatataaatagttatatggttataaaatttagGTGTCAAGCAAGATGGAAGTGCTTCTCACCTTTTCCATCGAGCAATCAAGGCTTATAATACTGGCAGTCGAAAGCGTCGAAAGATATGTGGTCAGGATTT
                ||   || |  ||   || ||      | ||   |||   ||||  |      ||      | | |  |  || |    || ||||||||||||||||||||| |  || ||| |||||||| || || | ||||| ||||||||||| |   ||||||| || ||||||     |   ||| |
tgacataggaatctcagtttctaactggaaaattgttgttttttgtacctctgttgtattgcttgtggtattcttcaactgacttttttttctttttcagGTGTCAAGCAAGATGGAAGCGTATCACACTTTTTCCATAGAACATTTAAGGCCTATAATACTGGAATAAGAAAGCGCCGGAAGATAAACACTGGTGATCT

upper sequence: GLYMA10G34730.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv01s0011g02990.t01 (Vitis vinifera), 3'ss of exon 3
-------------------gtggatagcatgagttttattcaa--accttaatactggattatttttcaatcaatataaatagttatatggttataaaatttagGTGTCAAGCAAGATGGAAGTGCTTCTCACCTTTTCCATCGAGCAATCAAGGCTTATAATACTGGCAGTCGAAAGCGTCGAAAGATATGTGGTCAGGATTT
                    |  |||  |  | |||| || |   | |  || |    |  |   || |     |     |  || | |  || |||||   |||||| |||||||||||||||||  ||||| |||| |||| |||||||||||||||||||||||| | |||||||||||||||||||  |||| | | |||
cttttggtgtccctctttactatata-tactacttttctttacctatcaaaaaaaaaaaaaaaacttgagctttttcttttctttttctttttttaaaa---agGTGTAAAGCAAGATGGAAGTGCAGCTCACTTTTTTCATCAAGCAATCAAGGCTTATAATACTGGAACTCGAAAGCGTCGAAAGATACATGGTGATGTTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatactggattatttttcaatcaatataaatagttatatggttataaaatttagGTGTCAAGCAAGATGGAAGTGCTTCTCACCTTTTCCATCGAGCAATCAAGGCTTATAATACTGGCAGTCGAAAGCGTCGAAAGATATGTGGTCAGGATTT
 ccttaat  putative branch site (score: 4)
         attatttttcaatcaa  TA-rich tract