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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctatactccattttccttctttttttcttccttatttctctctcacaccctcttttttcaattctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG

Basic information

species Glycine max
transcript GLYMA10G34370.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120532166|gb|EH260299.1|EH260299
EST:     CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
genomic: CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctata ... ctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
EST: gi|192332512|gb|FK024273.1|FK024273
EST:     CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
genomic: CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctata ... ctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
EST: gi|17022153|gb|BM093187.1|BM093187
EST:     CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
genomic: CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctata ... ctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
EST: gi|26047793|gb|CA784466.1|CA784466
EST:     CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
genomic: CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctata ... ctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
EST: gi|213617950|gb|DB967312.1|DB967312
EST:     CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
genomic: CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctata ... ctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
EST: gi|10845400|gb|BF068537.1|BF068537
EST:     CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
genomic: CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctata ... ctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
EST: gi|24205361|gb|BU964614.1|BU964614
EST:     CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
genomic: CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctata ... ctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
EST: gi|209709966|gb|BW681009.1|BW681009
EST:     CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
genomic: CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctata ... ctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
EST: gi|7589574|gb|AW705345.1|AW705345
EST:     CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTG                         GGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
genomic: CCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGgtatgctata ... ctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttcttccttatttctctctcacaccctcttttttcaattctccatacagGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAG
                     ctctcac  putative branch site (score: 3)
       tcttccttatttctct  CT-rich tract
                                  ttttttcaatt  TA-rich tract