1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actatgatcactattacttgtaaattgaattctgtttatacgaaaccttgcaatggtgacttgttgcaattagattataatccttatttattttttgcagCTGGACAAGAGAGGTTTGGAACAGTAATAAGTTCTTATTATAGAGGCGCACATGGAATCATTCTTG
species | Glycine max |
transcript | GLYMA10G34120.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTTTTACAGTTGGTGGTAAAAGATTGAAGCTTACTATTTGGGATACAG CTGGACAAGAGAGGTTTGGAACAGTAATAAGTTCTTATTATAGAGGCGCACEST: gi|192300976|gb|FG987961.1|FG987961
genomic: GCTTTTTACAGTTGGTGGTAAAAGATTGAAGCTTACTATTTGGGATACAGgtaactgatt ... ttttttgcagCTGGACAAGAGAGGTTTGGAACAGTAATAAGTTCTTATTATAGAGGCGCAC
EST: GCTTTTTACAGTTGGTGGTAAAAGATTGAAGCTTACTATTTGGGATACAG CTGGACAAGAGAGGTTTGGAACAGTAATAAGTTCTTATTATAGAGGCGCAC
genomic: GCTTTTTACAGTTGGTGGTAAAAGATTGAAGCTTACTATTTGGGATACAGgtaactgatt ... ttttttgcagCTGGACAAGAGAGGTTTGGAACAGTAATAAGTTCTTATTATAGAGGCGCAC
ccttgcaatggtgacttgttgcaattagattataatccttatttattttttgcagCTGGACAAGAGAGGTTTGGAACAGTAATAAGTTCTTATTATAGAGGCGCACATGGAATCATTCTTG
tccttatttatttttt CT-rich tract
aattagattataatcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actatgatcactattacttgtaaattgaattctgtttatacgaaaccttgcaatggtgacttgttgcaattagattataatccttatttattttttgcagCTGGACAAGAGAGGTTTGGAACAGTAATAAGTTCTTATTATAGAGGCGCACATGGAATCATTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - -tgaattc
- - - - - - - - - - - - - - - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgca