1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcatttgcatattatttggtcaattatatatttttttgggtgaaattgatactttatgataatattctgttttataccaatctttgatgcattacagAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGACTCAAAGATG
species | Glycine max |
transcript | GLYMA10G34050.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATGAATGTCAAGGGTTTGACGCTCTATCATTTGAAGAGTCATCTTCAG AAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGACTEST: gi|12773908|gb|BG238835.1|BG238835
genomic: CCATGAATGTCAAGGGTTTGACGCTCTATCATTTGAAGAGTCATCTTCAGgttcatttgc ... tgcattacagAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGACT
EST: CCATGAATGTCAAGGGTTTGACGCTCTATCATTTGAAGAGTCATCTTCAG AAGTACAGGCTTGGTAAGCAATCAGGGAAAAGATTCTGATGAGGGACTCAAEST: gi|208157979|gb|GD954162.1|GD954162
genomic: CCATGAATGTCAAGGGTTTGACGCTCTATCATTTGAAGAGTCATCTTCAGgttcatttgc ... tgcattacagAAGTACAGGCTTGGTAAGCAATCA-GGAAAAGATTCTGATGAGGGACTCAA
EST: CCATGAATGTCAAGGGTTTGACGCTCTATCATTTGAAGAGTCATCTTCAG AAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGACTCAAA
genomic: CCATGAATGTCAAGGGTTTGACGCTCTATCATTTGAAGAGTCATCTTCAGgttcatttgc ... tgcattacagAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGACTCAAA
aaattgatactttatgataatattctgttttataccaatctttgatgcattacagAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGACTCAAAGATG
atactttatgataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcatttgcatattatttggtcaattatatatttttttgggtgaaattgatactttatgataatattctgttttataccaatctttgatgcattacagAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGACTCAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG