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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttacatgaaataattttaatattatcctcatcattgacacatttcttgtcatcatgtttatgtttcctgatttattggctttacaactatatctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGACTACCATGGCTGCGTTTTCTTTCCTGAGCGATGGTTTAATTGTGTGGTTG

Basic information

species Glycine max
transcript GLYMA10G33100.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G33100.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G60340.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------------------------------------------ggttacatgaaataattttaatatt-atcctcatcattgacacatttcttgtcatcatgtttatgtttcctgatttattggctttaca--actatatctgtagGTCTG-----TGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGACTACCATGGCTGCGTTTTCTTTCCTGAGCGATGGTTTAATTGTGTGGTTG
                                                               |      ||  | ||| ||||  || |  ||     |||| | |  | | |  ||    ||          |  || || ||| ||    | |  |  ||| | || |     |||||| ||||| |||| ||||  ||  || || ||||||||||||||||||||||| |  ||||||||| ||||||||||| || | || || |
gttagtttcttactccatccctatccctttatcctccttatttccttgtcaacaaaacactttgaaccgttgctagaatcttaagcttcactctttagtttgataaagatttgg--attcaattcgaagaattagccttcttagctatattgtattgaacttgtggatcagGTGATTGATGAGCTTGACGATGCTATGATAGAAGGAGGGAACATTGTGGACTACCATGGCTGTGACTTCTTTCCTCAGCGATGGTTTGATCGCGTTGTCG

upper sequence: GLYMA10G33100.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g03280.t01 (Vitis vinifera), 3'ss of exon 1
ggttacatgaaataattttaatattatcctcatcattgacacatttcttgtcatcatgtttatgtttcctgatttattggctttacaacta-tatctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGACTACCATGGCTGCGTTTTCTTTCCTGAGCGATGGTTTAATTGTGTGGTTG
  |  ||     | ||  | || || |    |          ||    || |||| |  ||   |||  | | |  | | | ||     |  | | || |||| || ||||| || |||||| | |||||||  |||||||||||||||||||||||||| || | |||||| ||||||||||||||| || ||||||| |
tatctcactgtttgatgcttatcttttgtagaattacagtcaatcatatg-catcttaattccctttgttaaatcttcgacattttgtgtggtttttgcagGTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGACTACCATGGTTGTGATTTCTTCCCTGAGCGATGGTTTGATCGTGTGGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9203615|gb|BE329839.1|BE329839
EST:     TGGATGGATGGGATCTTGGGCTTCATTGTTATCTTCTTAATGAAGACTTG                         GTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGAC
genomic: TGGATGGATGGGATCTTGGGCTTCATTGTTATCTTCTTAATGAAGACTTGgtagatacat ... atatctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGAC
EST: gi|254331788|gb|GR843638.1|GR843638
EST:     TGGATGGATGGGATCTTGGGCTTCATTGTTATCTTCTTAATGAAGACTTG                         GTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGAC
genomic: TGGATGGATGGGATCTTGGGCTTCATTGTTATCTTCTTAATGAAGACTTGgtagatacat ... atatctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGAC
EST: gi|254331789|gb|GR843639.1|GR843639
EST:     TGGATGGATGGGATCTTGGGCTTCATTGTTATCTTCTTAATGAAGACTTG                         GTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGAC
genomic: TGGATGGATGGGATCTTGGGCTTCATTGTTATCTTCTTAATGAAGACTTGgtagatacat ... atatctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGAC
EST: gi|17022576|gb|BM093610.1|BM093610
EST:     TGGATGGATGGGATCTTGGGCTTCATTGTTATCTTCTTAATGAAGACTTG                         GTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGAC
genomic: TGGATGGATGGGATCTTGGGCTTCATTGTTATCTTCTTAATGAAGACTTGgtagatacat ... atatctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGAC
EST: gi|298175481|gb|HO015114.1|HO015114
EST:     TGGATGGATGGGATCTTGGGCTTCATTGTTATCTTCTTAATGAAGACTTG                         GTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGAC
genomic: TGGATGGATGGGATCTTGGGCTTCATTGTTATCTTCTTAATGAAGACTTGgtagatacat ... atatctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgtcatcatgtttatgtttcctgatttattggctttacaactatatctgtagGTCTGTGATGAACTTGAGGATGTTATGGAAGCGGGGGGAAACATTGTGGACTACCATGGCTGCGTTTTCTTTCCTGAGCGATGGTTTAATTGTGTGGTTG
                     tcctgat  putative branch site (score: 3)
             tttatgttt  TA-rich tract