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...ctaacttttgtatgtctagcattacctatgaataaactattcaatcttgtaaagatgtcccttcatagactttcactccttccttgtcttgcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTG
species | Glycine max |
transcript | GLYMA10G32850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|16347483|gb|BI973078.1|BI973078
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|298176989|gb|HO023350.1|HO023350
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|213595183|gb|DB960190.1|DB960190
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|209723482|gb|BW669483.1|BW669483
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|120532833|gb|EH260966.1|EH260966
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|298179399|gb|HO027870.1|HO027870
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGGGAGAGGATGCEST: gi|151408662|gb|EV278470.1|EV278470
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|209700349|gb|BW664386.1|BW664386
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|298171715|gb|HO021307.1|HO021307
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCACCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|120532878|gb|EH261011.1|EH261011
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|15338254|gb|BI498910.1|BI498910
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|193608632|gb|FK562378.1|FK562378
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|213616932|gb|DB959244.1|DB959244
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|209728923|gb|BW654990.1|BW654990
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|207808682|gb|GD780585.1|GD780585
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CATCAGTAACCTAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|193320687|gb|FK286530.1|FK286530
genomic: CATCAGTAACC-AGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|24205312|gb|BU964565.1|BU964565
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAA GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCEST: gi|209726738|gb|BW654840.1|BW654840
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
EST: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAG GTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
genomic: CCATCAGTAACCAGGGTCTTGTATACTGACAAGGATGTTTTAGGTCGCAGgtatatgtgt ... gcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGC
cttgtaaagatgtcccttcatagactttcactccttccttgtcttgcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTG
ctttcactccttcctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaacttttgtatgtctagcattacctatgaataaactattcaatcttgtaaagatgtcccttcatagactttcactccttccttgtcttgcgtctgtagGTATGTAAAAACCCAGATGGAACTTGCTGGCCTATCTGTGAGAGAGGATGCTGTTGGTAACATATTTGGTCGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - tgtatgt
- - - - - - - - - gcattac
- - - - - - - - - - - - -ctatgaa
- - - - - - - - - - - - - - - - - - ctattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccttc