1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttctaatctcccttttcacccacttttcatttttctcactttaatttctaagagaatgattgggttgaattgaaagaaagaaagaaaatgtttttatttatttatttttcattttggttgttaagagactaatggggctgttgaaaaaacaaaacttttgcggtgttagGCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAGTTATCTGGGGCCAAGAAACTTCAGTTGAGAAGGGTACTTCTTTTCATG
species | Glycine max |
transcript | GLYMA10G32690.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTTCAAGAAATATCTCAACCAGCTTCAGCTTCATCCTCTCAGAACCAAG GCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAGEST: gi|192308868|gb|FK002092.1|FK002092
genomic: TTTTCAAGAAATATCTCAACCAGCTTCAGCTTCATCCTCTCAGAACCAAGgtttctaatc ... gcggtgttagGCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAG
EST: AACCAGCTTCAGCTTCATCCTCTCAGAACCAAG GCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAGEST: gi|192308867|gb|FK002091.1|FK002091
genomic: AACCAGCTTCAGCTTCATCCTCTCAGAACCAAGgtttctaatc ... gcggtgttagGCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAG
EST: TTTTCAAGAAATATCTCAACCAGCTTCAGCTTCATCCTCTCAGAACCAAG GCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAGEST: gi|151408707|gb|EV278515.1|EV278515
genomic: TTTTCAAGAAATATCTCAACCAGCTTCAGCTTCATCCTCTCAGAACCAAGgtttctaatc ... gcggtgttagGCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAG
EST: TTTTCAAGAAATATCTCAACCAGCTTCAGCTTCATCCTCTCAGAACCAAG GCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAGEST: gi|192317018|gb|FK010921.1|FK010921
genomic: TTTTCAAGAAATATCTCAACCAGCTTCAGCTTCATCCTCTCAGAACCAAGgtttctaatc ... gcggtgttagGCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAG
EST: TTTTCAAGAAATATCTCAACCAGCTTCAGCTTCATCCTCTCAGAACCAAG GCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAGEST: gi|7285244|gb|AW597731.1|AW597731
genomic: TTTTCAAGAAATATCTCAACCAGCTTCAGCTTCATCCTCTCAGAACCAAGgtttctaatc ... gcggtgttagGCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAG
EST: TTTTCAAGAAATATCTCAACCAGCTTCAGCTTCATCCTCTCAGAACCAAG GCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAG
genomic: TTTTCAAGAAATATCTCAACCAGCTTCAGCTTCATCCTCTCAGAACCAAGgtttctaatc ... gcggtgttagGCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAG
tggttgttaagagactaatggggctgttgaaaaaacaaaacttttgcggtgttagGCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAGTTATCTGGGGCCAAGAAACTTCAGTTGAGAAGGGTACTTCTTTTCATG
gactaat putative branch site (score: 2)
cttttgc putative PPT
aaaaaacaaaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctaatctcccttttcacccacttttcatttttctcactttaatttctaagagaatgattgggttgaattgaaagaaagaaagaaaatgtttttatttatttatttttcattttggttgttaagagactaatggggctgttgaaaaaacaaaacttttgcggtgttagGCGATTACTGCGGCATTTTTGGCTGGTTTTAGTGATGCAGTGGCACAGAAGTTATCTGGGGCCAAGAAACTTCAGTTGAGAAGGGTACTTCTTTTCATG
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