Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttttattgtcgtaagtcttaactgattctttatttttttctctctatatttttttggttatatgtacaaagaattaattccttattttacagtattagcattactttgattatgcttgcagTTCTACTTCAAAAATGGTCGTCCACCTCCAAGTGAAATGAAAGAGCATTTCCTATATCAAATTGATAGTCGATTTTATGGTCATTTGGATGGTCTACAAT

Basic information

species Glycine max
transcript GLYMA10G32500.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15001181|gb|BI321995.1|BI321995
EST:     CACTAAAATTAGCCAGTGAGCCTGTAAGGGAGAGGGAGGTCATTCCACAG                         TTCTACTTCAAAAATGGTCGTCCACCTCCAAGTGAAATGAAAGAGCATTTC
genomic: CACTAAAATTAGCCAGTGAGCCTGTAAGGGAGAGGGAGGTCATTCCACAGgtatttttta ... atgcttgcagTTCTACTTCAAAAATGGTCGTCCACCTCCAAGTGAAATGAAAGAGCATTTC
EST: gi|22525064|gb|BU083875.1|BU083875
EST:     CACTAAAATTAGCCAGTGAGCCTGTAAGGGAGAGGGAGGTCATTCCACAG                         TTCTACTTCAAAAATGGTCGTCCACCTCCAAGTGAAATGAAAGAGCATTTC
genomic: CACTAAAATTAGCCAGTGAGCCTGTAAGGGAGAGGGAGGTCATTCCACAGgtatttttta ... atgcttgcagTTCTACTTCAAAAATGGTCGTCCACCTCCAAGTGAAATGAAAGAGCATTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagaattaattccttattttacagtattagcattactttgattatgcttgcagTTCTACTTCAAAAATGGTCGTCCACCTCCAAGTGAAATGAAAGAGCATTTCCTATATCAAATTGATAGTCGATTTTATGGTCATTTGGATGGTCTACAAT
     aattaattccttattt  TA-rich tract