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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttatcttgtacctggttctcttgtgtgtttatgctttcttttttctcttgtgattcctgccatgttaatgtgtaatataaatattttctcgcttgcagTTCTACTTTCAACATGGACCTCCACCTCCAAATGAACTGAAAGAAGAATGCTTGTTTAAAATTGATCGGTTATTCCATGATCATATGGATGGCATGCAGG

Basic information

species Glycine max
transcript GLYMA10G30930.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30930.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0036g00730.t01 (Vitis vinifera), 3'ss of exon 2
ttttatcttgtacctggttctcttgtgtgtttatgctttcttttttctcttgtgattcctgccatgttaa----tgtgtaatataaatattttct-cgcttgcagTTCTACTTTCAACATGGACCTCCACCTCCAAATGAACTGAAAGAAGAATGCTTGTTTAAAATTGATCGGTTATTCCATGATCATATGGATGGCATGCAGG
       ||     |  || |||||   |   |     |  |     | ||   | |  |  ||| || |    | | ||||    ||| ||||  | ||||||||| ||||||||| |||| |  ||||||||||||||||| || ||| |||| |||||||  ||  |||   | ||| |||||||  |||||||  ||||  
-----gattccttttttttttcttggaaggaaaaaaactgctagaattatttacactggtatcatatttaatggtatttaatgactatactttcgacacttgcagTTTTACTTTCAAAATGGCCGCCCACCTCCAAATGAACTAAAGGAACAATGTTTGTTTAGGATCAATCAAGTTTTCTATGATCACTTGGATGGACTGCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209705079|gb|BW667751.1|BW667751
EST:     GTTCTCCTTTGAAAGTTGTTAGCGAGCCAGTTAAAGAAGTGATACCTCAG                         TTCTACTTTCAACATGGACCTCCACCTC
genomic: GTTCTCCTTTGAAAGTTGTTAGCGAGCCAGTTAAAGAAGTGATACCTCAGgttcaggcag ... tcgcttgcagTTCTACTTTCAACATGGACCTCCACCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcttgtgattcctgccatgttaatgtgtaatataaatattttctcgcttgcagTTCTACTTTCAACATGGACCTCCACCTCCAAATGAACTGAAAGAAGAATGCTTGTTTAAAATTGATCGGTTATTCCATGATCATATGGATGGCATGCAGG
                   tgttaat  putative branch site (score: 3)
                                        ttttctcgctt  putative PPT
                  atgttaatgtgtaata  TA-rich tract