Sequence
atgc intronic sequence ATGC exonic sequence...ttttatcttgtacctggttctcttgtgtgtttatgctttcttttttctcttgtgattcctgccatgttaatgtgtaatataaatattttctcgcttgcagTTCTACTTTCAACATGGACCTCCACCTCCAAATGAACTGAAAGAAGAATGCTTGTTTAAAATTGATCGGTTATTCCATGATCATATGGATGGCATGCAGG
Basic information
species | Glycine max |
transcript | GLYMA10G30930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G30930.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0036g00730.t01 (Vitis vinifera), 3'ss of exon 2
ttttatcttgtacctggttctcttgtgtgtttatgctttcttttttctcttgtgattcctgccatgttaa----tgtgtaatataaatattttct-cgcttgcagTTCTACTTTCAACATGGACCTCCACCTCCAAATGAACTGAAAGAAGAATGCTTGTTTAAAATTGATCGGTTATTCCATGATCATATGGATGGCATGCAGG
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-----gattccttttttttttcttggaaggaaaaaaactgctagaattatttacactggtatcatatttaatggtatttaatgactatactttcgacacttgcagTTTTACTTTCAAAATGGCCGCCCACCTCCAAATGAACTAAAGGAACAATGTTTGTTTAGGATCAATCAAGTTTTCTATGATCACTTGGATGGACTGCAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7685311|gb|AW755959.1|AW755959EST: GTTCTCCTTTGAAAGTTGTTAGCGAGCCAGTTAAAGAAGTGATACCTCAG TTCTACTTTCAACATGGACCTGCACCTCCAAATGAACTGAAAGAAGAATGC
genomic: GTTCTCCTTTGAAAGTTGTTAGCGAGCCAGTTAAAGAAGTGATACCTCAGgttcaggcag ... tcgcttgcagTTCTACTTTCAACATGGACCTCCACCTCCAAATGAACTGAAAGAAGAATGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctcttgtgattcctgccatgttaatgtgtaatataaatattttctcgcttgcagTTCTACTTTCAACATGGACCTCCACCTCCAAATGAACTGAAAGAAGAATGCTTGTTTAAAATTGATCGGTTATTCCATGATCATATGGATGGCATGCAGG
tgttaat putative branch site (score: 3)
ttttctcgctt putative PPT
atgttaatgtgtaata TA-rich tract