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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttccccctcttcattcccttatttccctttttctttctttagtttatcattcccttatactactctttttcacaatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG

Basic information

species Glycine max
transcript GLYMA10G30440.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30440.3 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os12g40890.1 (Oryza sativa), 3'ss of exon 3
----------------------------------------------------------------gtcagttccccctcttcattcccttatttccctttttctttctttagtttatcattcccttatactactctttttcacaat----ttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG
                                                                 | |     |     | | || || || |   |   |  |       | | |  |    |   || | | | |||   |||     |  ||| ||||| |||||||||||| |||||||| | ||||||||||| || || ||||| |||||||
gtcagtaatctctacttaaattttctattatctaatatctaagtgtttaattttaataacctgaattaaggtactagtctgaatctctgatatgagtccatgctctgcatctgtgttctgaattctgaccattttgtttggaaatggaaatttcagGATGTTTGTTGAATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTG

upper sequence: GLYMA10G30440.3 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0081g00010.t01 (Vitis vinifera), 3'ss of exon 3
gtcagttccccctctt-----cattcccttatttcccttttt-------ctttctttagtttatcattcccttatactact-----ctttttcacaatttca--cagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG
|| |||| |  |  ||      |||  |  ||||   || ||       ||| | | | || |||  |   || ||||| |     ||| ||   ||||| |  ||| |||||||| ||||| ||| ||||| | |||||||||||||| || ||||| ||||| ||||
gtaagttacaacatttgacaatattttccaatttaaattgtttcaaaggcttacatcaattaatccatagattttactaattaatccttctttggaatttgaatcagGATGTTCGTCGAATCTTGCAAGCGCTTGCGCATAATGAAAGGATCCGAGGCCATCGGACTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722268|gb|BW651258.1|BW651258
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGA                         AATGTTCGTTGAATCATGCCAGCGCC
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCC
EST: gi|5606447|gb|AI900481.1|AI900481
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGAGA                         AATGTTCGCTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
EST: gi|10843606|gb|BF066882.1|BF066882
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGCGA                         AATGTTCGTTGAATCATGCCAGCGCCTTCGCATATTGAA
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAA
EST: gi|22524540|gb|BU083351.1|BU083351
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGNGA                         AATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
EST: gi|10708992|gb|BF008777.1|BF008777
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGA                         AATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
EST: gi|8402213|gb|BE057847.1|BE057847
EST:     TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGAGA                         AATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC
genomic: TATCAAGACAAGGACGGAGACTGGATGCTCGTCGGTGACGTGCCCTGGGAgtcagttccc ... aatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctttctttagtttatcattcccttatactactctttttcacaatttcacagAATGTTCGTTGAATCATGCCAGCGCCTTCGCATAATGAAAGGTTCTGAGGCTATCGGCCTTG
     tttctttagtttat  TA-rich tract