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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccttcttatttatattgcttttgtttgcatatattttcaatatgaatatgaatgaatttcctcacaaaatgttccatgtcttgtctatgcgattcagtgaagatgttttgaattagaagcaaagcaacctttgtgtttgtagttttggattactatataattacaataacttgattttggcttttttgcagATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAG

Basic information

species Glycine max
transcript GLYMA10G30270.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30270.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0030g01790.t01 (Vitis vinifera), 3'ss of exon 2
gtaaccttcttatttatattgcttttgtttgcatatattttcaatatgaatatgaatgaatttcctcacaaaatgttccatgtcttgtctatgcgattcagtgaagatgttttgaattagaagcaaagcaacctttgtgtttgtagttttggattactatataattacaataacttgattttggcttttttgcagATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAG
                                                                                           || |  | | | | | | || ||  |    |||||       || ||     |     ||  ||| ||| |   ||   |   ||| || |||  ||||  ||||  |||||||||| || || || || || |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| || ||||||
-------------------------------------------------------------------------------------------tgtg-ctaatttatgtttttgtgggtgttgagcaatagtgttttagtccaaatgagcatgtcttaatatctgggtatctt--tttgcttctgggatttt-acagACATGTCTTGTTTTCAAGGGCTCTTCTTTTGCCCAGATGCAGCTTCTTTGCTGCTTCATAACTTCTGCATTTACCACATTGATGCTCCTGGACATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021164|gb|BM092198.1|BM092198
EST:     GGATCAAGAAAAACCCGCTCTAATAACCTACCCAGACCTGGCTCTCAATT                         ATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGT
genomic: GGATCAAGAAAAACCCGCTCTAATAACCTACCCAGACCTGGCTCTCAATTgtaaccttct ... ttttttgcagATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtagttttggattactatataattacaataacttgattttggcttttttgcagATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAG
                                            cttttttgc  CT-rich tract
            attactatataattac  TA-rich tract