Sequence
atgc intronic sequence ATGC exonic sequencegtaaccttcttatttatattgcttttgtttgcatatattttcaatatgaatatgaatgaatttcctcacaaaatgttccatgtcttgtctatgcgattcagtgaagatgttttgaattagaagcaaagcaacctttgtgtttgtagttttggattactatataattacaataacttgattttggcttttttgcagATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAG
Basic information
species | Glycine max |
transcript | GLYMA10G30270.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G30270.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0030g01790.t01 (Vitis vinifera), 3'ss of exon 2
gtaaccttcttatttatattgcttttgtttgcatatattttcaatatgaatatgaatgaatttcctcacaaaatgttccatgtcttgtctatgcgattcagtgaagatgttttgaattagaagcaaagcaacctttgtgtttgtagttttggattactatataattacaataacttgattttggcttttttgcagATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAG
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-------------------------------------------------------------------------------------------tgtg-ctaatttatgtttttgtgggtgttgagcaatagtgttttagtccaaatgagcatgtcttaatatctgggtatctt--tttgcttctgggatttt-acagACATGTCTTGTTTTCAAGGGCTCTTCTTTTGCCCAGATGCAGCTTCTTTGCTGCTTCATAACTTCTGCATTTACCACATTGATGCTCCTGGACATGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17021164|gb|BM092198.1|BM092198EST: GGATCAAGAAAAACCCGCTCTAATAACCTACCCAGACCTGGCTCTCAATT ATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGT
genomic: GGATCAAGAAAAACCCGCTCTAATAACCTACCCAGACCTGGCTCTCAATTgtaaccttct ... ttttttgcagATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtagttttggattactatataattacaataacttgattttggcttttttgcagATGTGTCTTGTTTCCAGGGTCTTTTATTCTGCCCAGAGGCAGCTTCTTTGTTGCTTCATAACTTCTGCATTTATCACATTGATGCTCCGGGGCATGAG
cttttttgc CT-rich tract
attactatataattac TA-rich tract