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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttcttttttgatttttttgtgattgcggaatttgtgaagctgcttttttttttactgaagcagatgaatgatatgtttttaatattattattactagttgaaaattgtgttacctgtttaatttgttgtgtttggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAACACTGTATTTGTCTTCAAGTTCCGAACTCATTTTGGTGGTGGCAAGTCCA

Basic information

species Glycine max
transcript GLYMA10G30200.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19347217|gb|BM892097.1|BM892097
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|58025196|gb|CX711937.1|CX711937
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|209713547|gb|BW681537.1|BW681537
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|193549430|gb|FK508805.1|FK508805
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGT
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGT
EST: gi|254323029|gb|GR839942.1|GR839942
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|21675969|gb|BQ628320.1|BQ628320
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192306132|gb|FG993694.1|FG993694
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|42722991|gb|CK768890.1|CK768890
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192319861|gb|FK013273.1|FK013273
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192300336|gb|FG991438.1|FG991438
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|208201576|gb|GE000896.1|GE000896
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|11690358|gb|BF598034.1|BF598034
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|7796121|gb|AW781518.1|AW781518
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|4293568|gb|AI442066.1|AI442066
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|15001054|gb|BI321868.1|BI321868
EST:     CTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: CTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298185347|gb|HO030560.1|HO030560
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|58020774|gb|CX707516.1|CX707516
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192327529|gb|FK018205.1|FK018205
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192311719|gb|FK003580.1|FK003580
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAACGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|38193084|gb|CF922290.1|CF922290
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|12773510|gb|BG238437.1|BG238437
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192295452|gb|FG987066.1|FG987066
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|21595184|gb|BQ610395.1|BQ610395
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGTATCGTGAAAGACACCA
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATG-A-CGTGAAAGACACCA
EST: gi|298163232|gb|HO011965.1|HO011965
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|254315836|gb|GR825645.1|GR825645
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|151396920|gb|EV266793.1|EV266793
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|8827142|gb|BE210872.1|BE210872
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|7145698|gb|AW507620.1|AW507620
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|10843108|gb|BF066427.1|BF066427
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192325499|gb|FK017225.1|FK017225
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|209713548|gb|BW681538.1|BW681538
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298168344|gb|HO014519.1|HO014519
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCCGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298197015|gb|HO041782.1|HO041782
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298194597|gb|HO043069.1|HO043069
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192298217|gb|FG992052.1|FG992052
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|207766022|gb|GD737315.1|GD737315
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298187696|gb|HO031653.1|HO031653
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|208246271|gb|GE050169.1|GE050169
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|13181016|gb|BG352356.1|BG352356
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298183529|gb|HO028742.1|HO028742
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298177182|gb|HO027077.1|HO027077
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGGATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192311720|gb|FK003581.1|FK003581
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAACGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298198844|gb|HO042207.1|HO042207
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192313094|gb|FK004684.1|FK004684
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298173365|gb|HO016701.1|HO016701
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192319534|gb|FK009516.1|FK009516
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAACGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298171004|gb|HO016036.1|HO016036
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|6718631|gb|AW306278.1|AW306278
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192306133|gb|FG993695.1|FG993695
EST:     TCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: TCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298179237|gb|HO027708.1|HO027708
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|151393246|gb|EV263121.1|EV263121
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|254315835|gb|GR825644.1|GR825644
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|8285385|gb|BE022944.1|BE022944
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|254323030|gb|GR839943.1|GR839943
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192305683|gb|FG998033.1|FG998033
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298168639|gb|HO009569.1|HO009569
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298181619|gb|HO025794.1|HO025794
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACTCCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192322531|gb|FK014652.1|FK014652
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|298165850|gb|HO008821.1|HO008821
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|192313093|gb|FK004683.1|FK004683
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
EST: gi|26058682|gb|CA801596.1|CA801596
EST:     GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAG                         GCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC
genomic: GTCGTTGATGTCCTTCATCCAGGGAGGGCTAATGTTTCCAAGgtatttttct ... tggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattactagttgaaaattgtgttacctgtttaatttgttgtgtttggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAACACTGTATTTGTCTTCAAGTTCCGAACTCATTTTGGTGGTGGCAAGTCCA
                            gtttaat  putative branch site (score: 4)
                             tttaatttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatttttcttttttgatttttttgtgattgcggaatttgtgaagctgcttttttttttactgaagcagatgaatgatatgtttttaatattattattactagttgaaaattgtgttacctgtttaatttgttgtgtttggcttgaagGCTGAACTGAAGGAGAAGCTGGGAAGAATGTATGACGTGAAAGACACCAACACTGTATTTGTCTTCAAGTTCCGAACTCATTTTGGTGGTGGCAAGTCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG