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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggccaggtttggcttaataatctaagaaataaaagatactctttggtttcttttcaattggctgtatgtgatgtctccatatattatatgcctcctactgcagGTTAAATGTTACATACATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACGTACTTCACCGTGATATTAAAGGATCAAACCTTCTTATTGACA

Basic information

species Glycine max
transcript GLYMA10G30030.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30030.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G05050.1 (Arabidopsis thaliana), 3'ss of exon 3
gttaggccaggtttggcttaataatctaagaaataaaagatactctttggtttcttttcaattggctgtatgtgatgtctccatatattatatgcctcctactgcagGTTAAATGTTACATACATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACGTACTTCACCGTGATATTAAAGGATCAAACCTTCTTATTGACA
||||||||    ||||   ||||   | | ||||| || || |      | | ||   |       |||   | |||||    ||| ||             | ||||||||||| || ||  | ||||| || ||||| || ||||| || ||||  |||   || || |||||||||||||||||||||||||||||||| ||  
gttaggcc----ttggtgaaatagattcacaaatacaaaatccgaggcagatcctaacc------ttgttaataatgtc----tatgtt-------------ttcagGTTAAATGCTATATGAAGCAACTACTTTCAGGGCTCGAGCATTGCCATAACCGAGGAGTTCTACACCGTGATATTAAAGGATCAAACCTTCTTATAGATG

upper sequence: GLYMA10G30030.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G54610.1 (Arabidopsis thaliana), 3'ss of exon 3
gttaggccaggtttggcttaataatctaagaaataaaagatactctttggtttcttttcaattggctgtatgtgatgtctccatatattatatgcctcctactgcagGTTAAATGTTACATACATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACGTACTTCACCGTGATATTAAAGGATCAAACCTTCTTATTGACA
|||||   |||    | || |  ||||   |    |||     | | | |  |  |   | |  |  || | | | |       | ||||  |   |     |||||||||||||||  || | |||  || |||| ||  | ||||| |||||||||||    |||||||| ||||| || ||||||||||| |||||||||||  
gttag-ttaggc---gttttagtatctcgcattctaaa-----tttataggctaataatattcagtcgttttttaagat----cagattac-tcttttacgttgcagGTTAAATGTTTGATGCGTCAGTTGATATCTGGTTTGGAGCATTGTCATAGTCGTGGTGTACTTCATCGTGACATCAAAGGATCAAATCTTCTTATTGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttcaattggctgtatgtgatgtctccatatattatatgcctcctactgcagGTTAAATGTTACATACATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACGTACTTCACCGTGATATTAAAGGATCAAACCTTCTTATTGACA
                                          cctcctact  CT-rich tract
                           tccatatattatat  TA-rich tract