1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtgattggtgtctctgtgtttaatttgttgtttggtgaatttttaatggtgctttggttaatttggttttttgtgtatcagAACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGATTTGTTGAGTTTCTCATGAGGGAAGACTTTCCGCAGTTGCAG
species | Glycine max |
transcript | GLYMA10G29000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAACCTGCAGCTCGAGGCGACGACGCAGTTTCGGAAGCTGCTTTCGATTG AACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGATEST: gi|298179340|gb|HO027811.1|HO027811
genomic: TAACCTGCAGCTCGAGGCGACGACGCAGTTTCGGAAGCTGCTTTCGATTGgtttgtgatt ... tgtgtatcagAACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGAT
EST: TAACCTGCAGCTCGAGGCGACGACGCAGTTTCGGAAGCTGCTTTCGATTG AACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGATEST: gi|10847521|gb|BF070194.1|BF070194
genomic: TAACCTGCAGCTCGAGGCGACGACGCAGTTTCGGAAGCTGCTTTCGATTGgtttgtgatt ... tgtgtatcagAACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGAT
EST: TAACCTGCAGCTCGAGGCGACGACGCAGTTTCGGAAGCTGCTTTCGATTG AACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGAT
genomic: TAACCTGCAGCTCGAGGCGACGACGCAGTTTCGGAAGCTGCTTTCGATTGgtttgtgatt ... tgtgtatcagAACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGAT
gttgtttggtgaatttttaatggtgctttggttaatttggttttttgtgtatcagAACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGATTTGTTGAGTTTCTCATGAGGGAAGACTTTCCGCAGTTGCAG
ttttttgt CT-rich tract
ttaatttggtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgattggtgtctctgtgtttaatttgttgtttggtgaatttttaatggtgctttggttaatttggttttttgtgtatcagAACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGATTTGTTGAGTTTCTCATGAGGGAAGACTTTCCGCAGTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA