Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactaaattgctatgttgaatagtcgggtattatactattattgttgctcatgtttacttttgtttaaaattgatattaagatatgtttggttgaatgttgatatctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAA

Basic information

species Glycine max
transcript GLYMA10G28890.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g14270.2 (Oryza sativa), 3'ss of exon 2
gtaaactaaattgctatgttgaatagtcgggtattatactattattgttgctcatgtttacttttgtttaaaattgatattaagatatgtttggttgaat-gttgatatctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAA
                                       ||   | |  | |||  |  || |   |   | | | | |    |||   |||   |||||  ||  | |   ||||||||| ||||||  |||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||||| ||| || || ||  | || || ||||| ||
--------------------------------------gtaaattggaagatca-atacacctcattcagacactaaca----gatgatttttactgaattatttttcttgttgcagGTATCCAAACCTCTGAGGACTACAGGTTCTACGCTATTTCAGCGGAGTACCCAGAATTCAGCAACAAGGATAAAACCCTGGTGCTGCAGTTCTCTGTAAA

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G074687_T01 (Zea mays), 3'ss of exon 2
gtaaactaaattgctatgttgaatagtcgggtattatactattattgttgctcatgtttacttttgtttaaaattgatattaagatatgtttggttgaatgttgatatctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAA
                                                 | | ||    |   |     | ||| |  |||    | | || | |   | |||  |     ||||||||||||||||   ||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||| || ||  | || || ||||| ||
-------------------------------------------------gttaattcaaaacgtcaga-agaatggtgatttcagtttattagttaatacgtt--tcatgttgcagGTATTCAAACCTCCGAGGACTACAGGTTCTATGCCATTTCAGCTGAATACCCTGAATTCAGCAACAAGGATAAGACCCTGGTGCTGCAGTTCTCTGTGAA

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G358059_T01 (Zea mays), 3'ss of exon 2
gtaaactaaattgctatgttgaatagtcgggtattatactattattgttgctcatgtttacttttgtttaaaattgatattaagatatgtttggttgaatgttgatatctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAA
                                            |   | |  |    |       ||     ||    || |  ||||  |   | ||      | |   ||||||||||||||||   ||||||||||| |||||||| |||||||| || |||||||| ||||||||||||| |||||| || ||  | || || ||||| ||
-------------------------------------------gtaaattccaaaacatcagaagattggtggtttcagtttatttatgagttactcaacacgtttcttgttgcagGTATTCAAACCTCCGAGGATTACAGGTTCTATGCCATTTCAGCCGAATACCCTGAGTTCAGCAACAAGGATAAGACCCTGGTGCTGCAGTTCTCTGTGAA

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G09210.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaactaaattgctatgttgaatagtcgggtattatactattattgttgc-tcatgtttacttttgtttaaaattgatattaagatatgtttggttgaatgttgatatctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAA
                    | ||  |   |  ||      | ||    |  ||||  ||  || | ||  ||  |  |  |||    |  |||    | ||    | |||  |||||||| || |||||||| || ||||||||||| || ||||||||||||| |||||||||||| |||||||  |||||  ||||||| ||||| || || ||
--------------------gtatgattcagccttcagagctaatcacagaatcattatttattgttttacaagcttgtgctaatgcgttgttg--caattgccattgtctg-gcagGTATCCAGACCAGTGAAGACTACAGATTCTACGCCATTTCAGCTGAGTTCCCTGAATTCAGTAACAAGGACAAGACCTTAGTCTTCCAATTCTCAGTCAA

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G56340.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaactaaattgctatgttgaatagtcgggtattatactattattgttgctcatgtttacttttgtttaaaattgatattaagatatgtttggttgaatgttgatatctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAA
                                             | |   |||||   | |  || |    ||| |       ||||  |    | |||  | |      ||||||||| ||||| || ||||| ||||||||||| ||||| |||||||| | |||||| || |||||||||| ||||||  ||||||| ||||| ||||| ||
--------------------------------------------gtatgtttcatgaccagtgatgatgttgattcactgattcatattctcatgtcaattataactctcttgcagGTATCCAAACTAGCGAGGACTACAGATTCTACGCTATATCAGCTGAATTCCCTGAGTTTAGCAACAAGGATAAGACCTTAGTCTTCCAATTCTCTGTCAA

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0005g01390.t01 (Vitis vinifera), 3'ss of exon 2
----------gtaaactaaattgc---tatgttga-atagtcgggtattatactattat-tgttgctcatgttta----cttttgtttaaaat-tgat-------attaagatatgtttggttgaat-----gttgatatctctg--cagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAA
              | || | ||    ||  || | | || ||   | |    |   |  | |||||  ||||||     | |  ||| |  | ||||       |||||||  | |  |  |   |     |||   ||||  |  |||||||||| || ||||| || || |  |||||||| || |||||||||| |||||||||||| ||||||| ||||||  | || || || |||||||||||
gtatgctatccatcattatactgtctgtacattaacaaagacgaaaagtgctttgagacctcttgcttctgtttaagggttctcatttcaggtgtgattttccttattaagagttttcagactacttatatggtttgaatctgggtccagGTATTCAGACTAGTGAAGACTATAAGTTCTATGCAATCTCAGCTGAGTTCCCTGAATTCAGTAACAAGGATAAGACTTTGGTTTTCCAGTTTTCTGTTAA

upper sequence: GLYMA10G28890.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 3'ss of exon 2
gtaaactaaattgctatgttgaatagtcgggtattatactattattgttgctcatgtttacttttgtttaaaattgatattaagatatgt---ttggttgaatgttgatatctc---tgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAA
         |||  | |  |  | | ||   ||     |||||   |    |  |   | || ||  ||||  | ||  || | || |||   ||| ||  |  |  ||        |  |||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||| || |||||| |||||||
-------gtattattttcatacacattcttatac----ctatttggggcaatgtttcattctctttattaatttggactttgaaatgtgtaacttgatttgacttcaatggtctggatatagGTATCCAAACAAGTGAGGACTACAGATTCTATGCTATATCAGCTGAGTACCCTGAATTCAGCAACAAAGATAAGACATTAGTTTTCCAATTTACTGTTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208120804|gb|GD916091.1|GD916091
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193314617|gb|FK278317.1|FK278317
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193312975|gb|FK279588.1|FK279588
EST:     CGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: CGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193369196|gb|FK337088.1|FK337088
EST:     AACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: AACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|207766394|gb|GD738722.1|GD738722
EST:     AACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: AACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193438767|gb|FK410290.1|FK410290
EST:     GACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|18692974|gb|BM521822.1|BM521822
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193336224|gb|FK297648.1|FK297648
EST:     GAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193618194|gb|FK570736.1|FK570736
EST:     TGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: TGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193470031|gb|FK436812.1|FK436812
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGACTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|207729098|gb|GD704866.1|GD704866
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|208085877|gb|GD882453.1|GD882453
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193472464|gb|FK438657.1|FK438657
EST:     ATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: ATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|8827255|gb|BE210985.1|BE210985
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|208225556|gb|GE025807.1|GE025807
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATG
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATG
EST: gi|120492727|gb|EH220894.1|EH220894
EST:     ATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: ATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193611312|gb|FK564972.1|FK564972
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193570973|gb|FK528550.1|FK528550
EST:     GGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|207807326|gb|GD779369.1|GD779369
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193455403|gb|FK419296.1|FK419296
EST:     AACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: AACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|208122609|gb|GD924953.1|GD924953
EST:     TGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: TGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|192334620|gb|FK025195.1|FK025195
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193336354|gb|FK298128.1|FK298128
EST:     GTAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: G-AGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193408218|gb|FK374952.1|FK374952
EST:     TGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: TGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|120493122|gb|EH221289.1|EH221289
EST:     AATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: AATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|208192900|gb|GD988383.1|GD988383
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|208294355|gb|GE092172.1|GE092172
EST:     GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: GGAGTGGAACCACACCTCTGGTCAATGGAATGGAGACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
EST: gi|193707724|gb|FK646820.1|FK646820
EST:     ACGCTAATGACAAAG                         GTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC
genomic: ACGCTAATGACAAAGgtaaactaaa ... atctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtttaaaattgatattaagatatgtttggttgaatgttgatatctctgcagGTATTCAAACCAGTGAGGATTACAGATTCTATGCTATTTCAGCTGAGTACCCTGAATTCAGCAACAAGGGTAAGACACTAGTCTTTCAATTTTCTGTTAA
                                      tgttgat  putative branch site (score: 4)
                                            tatctct  CT-rich tract
     tttaaaattgatatta  TA-rich tract