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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttttttacccaattaattgtgctctttatcatgtctatttatgcaagccattttcactttattaaggcatacttttttctttgtatcctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTTGTCATCATTTTCGTGGTGACCGTTCTTCTTGCCGCCCTTGATTTTTGGG

Basic information

species Glycine max
transcript GLYMA10G28620.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314171|gb|FK011543.1|FK011543
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|193661783|gb|FK605229.1|FK605229
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|18719390|gb|BM523167.1|BM523167
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|298168658|gb|HO009588.1|HO009588
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|192322592|gb|FK014713.1|FK014713
EST:     GTGAAAACTACGTCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|10843334|gb|BF066637.1|BF066637
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|19348499|gb|BM893031.1|BM893031
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|192333423|gb|FK023952.1|FK023952
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|58025339|gb|CX712080.1|CX712080
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|192314172|gb|FK011544.1|FK011544
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|298163961|gb|HO013606.1|HO013606
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|298170569|gb|HO019193.1|HO019193
EST:     GTGAAAACTACGCCAATCCCAGGACTCGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
EST: gi|192326657|gb|FK017314.1|FK017314
EST:     GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAG                         GCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT
genomic: GTGAAAACTACGCCAATCCCAGGACTTGCTTCTTTCATGTCCTCTTCAAGgtttttttta ... cctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaagccattttcactttattaaggcatacttttttctttgtatcctctctcagGCTGCAGCCTTGGCATTTTACATTCTCTCGGCCCTCTTTATTGATAACTTTGTCATCATTTTCGTGGTGACCGTTCTTCTTGCCGCCCTTGATTTTTGGG
                          catacttttttctttg  CT-rich tract
        attttcactttattaa  TA-rich tract