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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatttgtaaccccgctctttgatattttcgtttttttcatgttagttttattttctctatgtccatgttgttggttacttacagtttgcttcattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG

Basic information

species Glycine max
transcript GLYMA10G28530.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28530.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 2
---------gtatgtaatttgtaaccccgctctttgatattttcgtttttttcatgttagttttattttctctat----gtccatgt-tgttggttacttacagtt-tgcttcattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG
         | |      |  |    | | |  ||  | ||   |||  ||   | ||   |  | ||  |  ||    |  ||| |   ||||||||| |      | ||| |||||  |||| |||||||| ||||||||||| || |||||||| |||||||| ||||| |||||||| || ||||| ||||||||||| || || ||||||
gtatgtgagggactggtctaatgcttctgtttcttcgtgttactgttccttgtcttttgcctgcacttaattgattattgatcatttgcattggttactgaagacagttcttgatttttcagGAGATGGAAGCAACAGTTGTTGACGGTAATGGAACAGAGACAGGTCATATAATTGTGACGACTATTGGTGGTAGAAATGGCCAACCAAAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254344095|gb|GR851005.1|GR851005
EST:     TTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATC
genomic: TTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATC
EST: gi|21602288|gb|BQ612619.1|BQ612619
EST:     TTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATC
genomic: TTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATC
EST: gi|298194802|gb|HO043274.1|HO043274
EST:     TTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGGCATATC
genomic: TTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATC
EST: gi|208184951|gb|GD984951.1|GD984951
EST:     TTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGGCAGGACATATC
genomic: TTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATC
EST: gi|5676842|gb|AI937972.1|AI937972
EST:     TTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGA                         GAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATC
genomic: TTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAgtatgtaatt ... cattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattttctctatgtccatgttgttggttacttacagtttgcttcattttgtagGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCCAAGCAG
                             tacttac  putative branch site (score: 1)
                                          cttcatttt  putative PPT
                                           ttcatttt  TA-rich tract