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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caagagttgcatggattgaatgcctgactaactaactgatccaattgctatattctgtgaatattgatatcagcaattaatctaacatatttttctacagTTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAGTG

Basic information

species Glycine max
transcript GLYMA10G28310.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28310.2 (Glycine max), 3'ss of exon 2
lower sequence: AT3G05870.1 (Arabidopsis thaliana), 3'ss of exon 3
--------------------------------------------------------------------caagagttgcatggattgaatgcctgactaactaactgatccaattgctatattctgtgaatattgatatcagcaattaatctaacatatt-tttctacagTTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAGTG
                                                                      |  |   ||| |  | ||    |   ||    | | |  |||   | | | |   ||  | | ||  | | |  ||    |    |  | |||   |||||||||| |  ||||| ||||| |||||| | ||||||||  |||||||||||||||| |||||    ||||| |||||||| |||||| |  | || ||
gtaaagttctcttctttcatgtcttcgcttttatatatgttgcttagaacacccactatttctcttgcttacggaaacattg-ctaaacatttacttatggtaataactcaaa-acaaaactgcatgcct-tagaccttatctgttttggtgttttggtgtttgggcagTTTGGGGAGCCTGCAACCACGCGTTTCATCTTCACTGTATATTGAAATGGGTGAATTCGCAGACGAGCCAAGCTCATTGCCCAATGTGCAGAAGAGAATG

upper sequence: GLYMA10G28310.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv15s0046g03770.t01 (Vitis vinifera), 3'ss of exon 2
caagagttgcatggattgaatgcctgactaactaactgatccaattgctatattctgtgaatattgatatcagcaattaatctaaca-------tatttttctacagTTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAGTG
      ||  ||  ||  ||     || |||  ||    |  | ||  | |      |   |||  ||   |  ||| | ||||  |       | || | || ||||||||||||  ||||| || ||||||||| | || || ||| |||||||||||||||| |||||  | |||||||||||||||||||||||| |||| ||
------ttatatatat-aaaaaaaagattaaagaaacttttaagttttttttaggaattggtatcaatccaactaatgattctattaaccattgttttgtcctgcagTTTGGGGTGCTTGCAACCATGCATTTCATCTCCATTGCATCTTGAAATGGGTGAATTCGCAGACTCCTCAAGCGCATTGCCCCATGTGCCGTAGGGAATG

upper sequence: GLYMA10G28310.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0060g00290.t01 (Vitis vinifera), 3'ss of exon 5
caagagttgcatggattgaatgcctgactaactaactgatccaattgctatattctgtgaatattgatatcagcaattaatctaaca-------tatttttctacagTTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAGTG
      ||  ||  ||  ||     || |||  ||    |  | ||  | | |    |   |||  ||   |  ||| | ||||  |       | || | || ||||||||||||  ||||| || ||||| ||| | || || ||| |||||||||||||||| |||||  | |||||||||||||||||||||||| |||| ||
------ttatatatat-aaaaaaaagattaaagaaacttttaagtttttttttggaattggtatcaatccaactaatgattctattaaccattgttttgtcctgcagTTTGGGGTGCTTGCAACCATGCATTCCATCTCCATTGCATCTTGAAATGGGTGAATTCGCAGACTCCTCAAGCGCATTGCCCCATGTGCCGTAGGGAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193360358|gb|FK325128.1|FK325128
EST:     TGATGGATGTTGTCCTGACTGCAAACTTCCTGGAGATGACTGCCCACTGA                         TTTGGGGTGTATGCAATCACGCATTTCATCTGCACTGTATCCTGAAATGGG
genomic: TGATGGATGTTGTCCTGACTGTAAACTTCCTGGAGATGACTGCCCATTGAgtaagctact ... ttttctacagTTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGG
EST: gi|31466383|gb|CD408411.1|CD408411
EST:     TGATGGATGTTGTCCTGACTGTAAACTTCCTGGAGATGACTGCCCATTGA                         TTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGG
genomic: TGATGGATGTTGTCCTGACTGTAAACTTCCTGGAGATGACTGCCCATTGAgtaagctact ... ttttctacagTTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctatattctgtgaatattgatatcagcaattaatctaacatatttttctacagTTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAGTG
                                  atctaac  putative branch site (score: 2)
                                          tatttttct  CT-rich tract
                             aattaatctaacatat  TA-rich tract