Sequence
atgc intronic sequence ATGC exonic sequencegtaatcttaattgtaattgtaattcaatctctctcatgattgaattaatcaattctctcccttttttattttctactgtggttaacttttttttcttttgcttgacatgcatattattatcctgtgctgtttcagGTGGTCTCAAATTGCAGCACAGTTGCCGGGGAGGACAGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAGGGAATA
Basic information
species | Glycine max |
transcript | GLYMA10G27940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G27940.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0005g02480.t01 (Vitis vinifera), 3'ss of exon 2
gtaatcttaattgtaattgtaattcaatctctctcatgattgaattaatcaattctctcccttttttattttctactgtggttaacttttttttcttttgcttgacatgcatattattatcctgtgctgtttcagGTGGTCTCAAATTGCAGCACAGTTGCCGGGGAGGACAGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAGGGAATA
|| || |||||| | || || | ||| | | ||| || | | || ||||| | |||| ||||| | | | | ||| |||||||||| ||||| ||||||||| |||| || | || |||||||||||||||||| ||||||||||||||||||||||||| || ||||| | || ||
------------------gtcatcactcctctcttaatatctaa------acttcaccttatcctttcttctttcttg---------tttttcatgtatgct-gacattactg--ggtttttggggcttcctcagGTGGTCCCAAATCGCAGCACAGCTGCCTGGACGCACTGACAATGAAATAAAGAATTTGTGGAACTCTTGCTTGAAGAAGAAGCTCAGGCAGAGAGGCATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttaacttttttttcttttgcttgacatgcatattattatcctgtgctgtttcagGTGGTCTCAAATTGCAGCACAGTTGCCGGGGAGGACAGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAGGGAATA
ctgtttc CT-rich tract
ttttttttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatcttaattgtaattgtaattcaatctctctcatgattgaattaatcaattctctcccttttttattttctactgtggttaacttttttttcttttgcttgacatgcatattattatcctgtgctgtttcagGTGGTCTCAAATTGCAGCACAGTTGCCGGGGAGGACAGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAGGGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA