Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcctctttcctttctttgattttgtttgtcaaatgcaatgtccggaaggataaagggcaactgttcttaattttgttttctcatggaatataatgttgacaaaggtgacagGGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAG

Basic information

species Glycine max
transcript GLYMA10G27890.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G27890.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G01690.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgtgtcctctttcctttctttgattttgtttgtcaaatgcaatgtccggaaggataaagggcaactgttcttaattttgttttctcatggaatataatgttgacaaaggtgacagGGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAG
||||||  |||| |     |||   |          |||   || |            |||||   |  | ||  |    | | ||||||   |   |  ||| |||||||||||||||| ||| ||||| || || |||||||| || || ||||| ||||||||||||||||| ||  |||| || || ||||||||||
gtgtgtattcttacgaccttttagatc---------aatatgattttt----------agggc--tttatgttggtagaatctgctcatgttcttagagtttggcaaaggtgacagGGTCGTGAAGAATCTGTGGAGGAGTTTGTACGGCGTAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAACCGTTTTGTTCAG

upper sequence: GLYMA10G27890.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0005g02540.t01 (Vitis vinifera), 3'ss of exon 2
gtgtgtcctctttcct---ttctttgattttgtt----tgtcaaatgcaa---tgtccggaaggataaagggcaactgttcttaattttgttttctcatggaatataatgttgacaaaggtgacagGGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAG
||| ||  ||||  ||   |||| ||| ||||||    | |   ||| ||   | | |  | | ||       |    |||||   ||   |||||||   | |    | ||||| ||||||||||| |||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||  |||||||||| ||||||||||
gtgcgtgttcttaactatattctatgagtttgttgaagtatatcatggaaatatattcacatgaattgcatatatgcattcttccattgaatttctca--aacttatgttttgacgaaggtgacagGATCATGAGGAATCTGTTGAAGAGTTTGTGCGTCGTAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAG

upper sequence: GLYMA10G27890.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ23527 (Selaginella moellendorffii), 3'ss of exon 2
gtgtgtcctctttcctttctttgattttgtttgtcaaatgcaatgtccggaaggataaagggcaactgttcttaattttgttttctca--tggaatataatgttgacaaaggtgacagGGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAG
                                                 | | |  ||  |    || || ||  || | ||||   |   ||  |  | | ||  |    ||| ||||||  ||| ||||| || ||  ||||||||||||||||||| |||||||| || |||||  || |||| || ||||| |||||||
-------------------------------------------------gtatgtcaagtgtatcctttttttgtttctcttttaataaacggtgttcattattttctgttgtg-cagGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAGTCTTTGAGAGGCTGATCGAACCTTTCTGTTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15338141|gb|BI498797.1|BI498797
EST:     GCAAAATCAGGGCTGGCTTTGGTGCGCTTGGAATTCGGCCTCCTCCTCCA                         GTGACAGGGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGG
genomic: GCAAAATCAGGGCTGGCTTTGGTGCGCTTGGAATTCGGCCTCCTCCTCCAgtgtgtcctc ... aaggtgacagG-G------TCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGG
EST: gi|15338083|gb|BI498739.1|BI498739
EST:     GCAAAATCAGGGCTGGCTTTGGTGCGCTTGGAATTCGGCCTCCTCCTCCA                         GGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAG
genomic: GCAAAATCAGGGCTGGCTTTGGTGCGCTTGGAATTCGGCCTCCTCCTCCAgtgtgtcctc ... aaggtgacagGGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAG
EST: gi|17022014|gb|BM093048.1|BM093048
EST:     GCAAAATCAGGGCTGGCTTTGGTGCGCTTGGAATTCGGCCTCCTCCTCCA                         GGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAG
genomic: GCAAAATCAGGGCTGGCTTTGGTGCGCTTGGAATTCGGCCTCCTCCTCCAgtgtgtcctc ... aaggtgacagGGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaactgttcttaattttgttttctcatggaatataatgttgacaaaggtgacagGGTCATGAGGAATCGGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGAGGTTTTTGAACGGTTGATAGAGCCTTTTTGTTCAG
                                     tgttgac  putative branch site (score: 3)
       ttcttaattttgtttt  TA-rich tract