1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcgtgtgcccgtgttctgttctggaatcttctatttttcttattttacccctttggaattgaatattggaagtttttgttttgtttttttttttttggttattttgtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTTCAAGTTTCCCGAGAACAGTGTCGAACTTTATGCTGAAAAGGTCAACAA
species | Glycine max |
transcript | GLYMA10G26790.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|298187775|gb|HO031732.1|HO031732
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|213607333|gb|DB967070.1|DB967070
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|21994938|gb|BQ786466.1|BQ786466
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|7041681|gb|AW471522.1|AW471522
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|6566521|gb|AW234164.1|AW234164
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|298193606|gb|HO040254.1|HO040254
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|4313367|gb|AI460486.1|AI460486
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: ATGCGCACCGAAATCATAATTAGAGCCACCAGAAACCCA-GCTGTTCTCG GTGAGAAGGGAAGGAGAAEST: gi|213601492|gb|DB956742.1|DB956742
genomic: ATGCGCACCGAAATCATAATTAGAGCCACCAGAA-CCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAA
EST: GATGCGCACCGAAATCGTAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|209716015|gb|BW662266.1|BW662266
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|209717515|gb|BW653955.1|BW653955
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|192299860|gb|FG993350.1|FG993350
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|151398090|gb|EV267968.1|EV267968
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|15203305|gb|BI426073.1|BI426073
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|42722910|gb|CK768809.1|CK768809
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|209711928|gb|BW679007.1|BW679007
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|6725979|gb|AW310378.1|AW310378
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: CCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|213597996|gb|DB972184.1|DB972184
genomic: CCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|42722882|gb|CK768781.1|CK768781
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|16996025|gb|BM085397.1|BM085397
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|27427516|gb|CA939036.1|CA939036
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|298184418|gb|HO029631.1|HO029631
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGTGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|19269579|gb|BM885835.1|BM885835
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGTTTCAGAAGAGGTEST: gi|21601379|gb|BQ611710.1|BQ611710
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|120530330|gb|EH258463.1|EH258463
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|213617025|gb|DB959337.1|DB959337
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|27424060|gb|CA935580.1|CA935580
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|12773588|gb|BG238515.1|BG238515
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|151406970|gb|EV276785.1|EV276785
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|24135989|gb|BU926499.1|BU926499
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|192324283|gb|FK018259.1|FK018259
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATACGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|6502154|gb|AW203527.1|AW203527
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|209718917|gb|BW669106.1|BW669106
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAACGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|298166628|gb|HO010067.1|HO010067
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|16996729|gb|BM086101.1|BM086101
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|213603280|gb|DB970389.1|DB970389
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|193309818|gb|FK274988.1|FK274988
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|10709986|gb|BF009710.1|BF009710
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|298178210|gb|HO023945.1|HO023945
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTEST: gi|209729681|gb|BW669781.1|BW669781
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
EST: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCG GTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
genomic: GATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgc ... gtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGT
gaatattggaagtttttgttttgtttttttttttttggttattttgtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTTCAAGTTTCCCGAGAACAGTGTCGAACTTTATGCTGAAAAGGTCAACAA
tttttgttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgtgcccgtgttctgttctggaatcttctatttttcttattttacccctttggaattgaatattggaagtttttgttttgtttttttttttttggttattttgtattaatagGTGAGAAGGGAAGGAGAATAAGGGAACTTACCTCTGTGGTTCAGAAGAGGTTCAAGTTTCCCGAGAACAGTGTCGAACTTTATGCTGAAAAGGTCAACAA
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