1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtttgaagggacttggcattatctgcagttgtttatgcatgtacagttaatagtatggctctcattttccccaaactaaaaatacttttccatgggcagCAAATCCATGCACTGATTATGTCACTCAGTTACACTGGAATTGAAATCAAGACTGCACAGTCTCTAGAATCTTGGAGTGGTGGAGTTCTTGTGATGGTTT
species | Glycine max |
transcript | GLYMA10G26640.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCATGCTCCGTGTCGACGGCAACGCCAGGGAAACTGCGGCCGCAATGCTT CAAATCCATGCACTGATTATGTCACTCAGTTACACTGGAATTGAAATCAAGEST: gi|151406738|gb|EV276553.1|EV276553
genomic: CCATGCTCCGTATCGACGGCAACGCCAGGGAAACTGCGGCCGCAATGCTTgtaatttctg ... ccatgggcagCAAATCCATGCACTGATTATGTCACTCAGTTACACTGGAATTGAAATCAAG
EST: CCATGCTCCGTATCGACGGCAACGCCAGGGAAACTGCGGCCGCAATGCTT CAAATCCATGCACTGATTATGTCACTCAGTTACACTGGAATTGAAATCAAG
genomic: CCATGCTCCGTATCGACGGCAACGCCAGGGAAACTGCGGCCGCAATGCTTgtaatttctg ... ccatgggcagCAAATCCATGCACTGATTATGTCACTCAGTTACACTGGAATTGAAATCAAG
agttaatagtatggctctcattttccccaaactaaaaatacttttccatgggcagCAAATCCATGCACTGATTATGTCACTCAGTTACACTGGAATTGAAATCAAGACTGCACAGTCTCTAGAATCTTGGAGTGGTGGAGTTCTTGTGATGGTTT
aactaaa putative branch site (score: 2)
tacttttcc putative PPT
aaactaaaaatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttgaagggacttggcattatctgcagttgtttatgcatgtacagttaatagtatggctctcattttccccaaactaaaaatacttttccatgggcagCAAATCCATGCACTGATTATGTCACTCAGTTACACTGGAATTGAAATCAAGACTGCACAGTCTCTAGAATCTTGGAGTGGTGGAGTTCTTGTGATGGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - -ggcatta
- - - - - - - - - - - tctgcag
- - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata