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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagttgttttgggctaactttctttctttctcttttccatttcttagagaactagtggctattctttctgtggttattaaattaaattttttggtttgtaaaagcaaagcacgctttgtaatttgataagttccattcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGGTGAGGCTCACTGCTGACTTGATCTGGAAAAGCCCTCATTTCTTCAACGC

Basic information

species Glycine max
transcript GLYMA10G24350.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425309|gb|CA936829.1|CA936829
EST:     GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT                         TCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
genomic: GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
EST: gi|7926083|gb|AW832109.1|AW832109
EST:     GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT                         TCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
genomic: GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
EST: gi|192320515|gb|FK011925.1|FK011925
EST:     GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT                         TCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
genomic: GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
EST: gi|13479182|gb|BG508525.1|BG508525
EST:     GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT                         TCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
genomic: GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
EST: gi|213618238|gb|DB973008.1|DB973008
EST:     GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT                         TCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
genomic: GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
EST: gi|13791609|gb|BG654200.1|BG654200
EST:     GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT                         TCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
genomic: GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
EST: gi|192308052|gb|FG999035.1|FG999035
EST:     GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT                         TCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
genomic: GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
EST: gi|213595893|gb|DB966252.1|DB966252
EST:     GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT                         TCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
genomic: GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
EST: gi|10232355|gb|BE801243.1|BE801243
EST:     GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT                         TCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
genomic: GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
EST: gi|27446299|gb|CA953422.1|CA953422
EST:     GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTT                         TCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG
genomic: GTTTGAGTCCTCATTACCCGCCTCTCTCTGGAAACCAGCAAAACCACCTTgtaagagttg ... attcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggtttgtaaaagcaaagcacgctttgtaatttgataagttccattcttgcagTCTCTACTATCTATCGGTTCCTTTTGTACTCTGAGTGGGTAGAAGACATGGTGAGGCTCACTGCTGACTTGATCTGGAAAAGCCCTCATTTCTTCAACGC
                               atttgat  putative branch site (score: 5)
                                         ttccattctt  putative PPT
                         tttgtaatttgataa  TA-rich tract