1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgtttatgttatagggtatcttttattttgtaaatgcaaattttgcttgcttgcattttgttgaactaatttttatgtcgttcacacttgcattattaaattggtatattccttgtctatgctttgtgcatgcaatatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTTTTGGAGTGTACAGTGTCCCTTCTTACTGACTATGAAACTGCTAACCAT
species | Glycine max |
transcript | GLYMA10G24340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|193322244|gb|FK284980.1|FK284980
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTTCCACCCATACAAGTTAATGAGCTTCCGCEST: gi|8285420|gb|BE022979.1|BE022979
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTT-CCACCCATACAAGTTAATGAGCTTCCGC
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|298165887|gb|HO008858.1|HO008858
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|192303251|gb|FG995587.1|FG995587
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|209721129|gb|BW659167.1|BW659167
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|298177643|gb|HO027310.1|HO027310
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|298194018|gb|HO040666.1|HO040666
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|192302476|gb|FG996254.1|FG996254
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|151397948|gb|EV267821.1|EV267821
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|58017309|gb|CX704051.1|CX704051
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|192319095|gb|FK010631.1|FK010631
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|11274924|gb|BF325249.1|BF325249
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|192313351|gb|FK005123.1|FK005123
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|298197776|gb|HO039315.1|HO039315
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTCCCGCTEST: gi|151395355|gb|EV265226.1|EV265226
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|192294004|gb|FG987173.1|FG987173
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGGGCTTCCGCTEST: gi|209721128|gb|BW659166.1|BW659166
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|163927119|gb|EH038550.1|EH038550
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|151395434|gb|EV265311.1|EV265311
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|192313350|gb|FK005122.1|FK005122
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|48575279|gb|CO036324.1|CO036324
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|151398285|gb|EV267869.1|EV267869
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTEST: gi|17519784|gb|BM188826.1|BM188826
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
EST: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAG TGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
genomic: CTGGAAGCACGCAGCTTGATCAATGGGCTCAAAGATTATGCGCTGACCAGgtttgtttat ... tatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCT
cattattaaattggtatattccttgtctatgctttgtgcatgcaatatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTTTTGGAGTGTACAGTGTCCCTTCTTACTGACTATGAAACTGCTAACCAT
ttaaattggtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttatgttatagggtatcttttattttgtaaatgcaaattttgcttgcttgcattttgttgaactaatttttatgtcgttcacacttgcattattaaattggtatattccttgtctatgctttgtgcatgcaatatcttgcagTGCCCTCAGGGACCGGAGATTTCCACCCATACAAGTTAATGAGCTTCCGCTTTTGGAGTGTACAGTGTCCCTTCTTACTGACTATGAAACTGCTAACCAT
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