Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgttttagtggttttaaaagaattattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG

Basic information

species Glycine max
transcript GLYMA10G16090.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G107893_T01 (Zea mays), 3'ss of exon 4
---ctgttttagtgg--ttttaaaagaat-tattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
      ||    |||    || ||    |  ||| |  ||     || |||  ||||||| ||  | | ||     | |    || |  ||  | | |  |  ||||| |||||||  ||||| |||||  |||| || ||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| |||||  | |
tcaaaattcagatggaacgttgaagctgtgcatttttattgctatagcttg--ttttgtgata--attgctaatgaattgatcaatccttg--tttaccaatgcagATCGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G151549_T02 (Zea mays), 3'ss of exon 1
-ctgttttagtggttttaaaagaattattctacttttggaagtttgaatt-ttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
     || ||  |         |  | | |   ||||     | |   || || ||  || | | ||     | |    || |  ||  | | |  |  ||||| |||||||  ||||| |||||  |||| || ||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| |||||  | |
caaaattcagatgaaacgttgaagctgtgcattttttattgctatagcttgttttgtgataaatgctaatgaattgatcaatccttg--tttaccaatgcagATCGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATCGTG

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G132144_T01 (Zea mays), 3'ss of exon 5
------ctgttttagtggttttaaaagaattattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
       |    |      || ||       ||| |  ||     || |||  ||||||| ||  | | ||     | |    || |  ||  | | |  |  ||||| |||||||  ||||| |||||  |||| || ||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| |||||  | |
tcaaaattcagatgaaacgttgaagctgcgcatttttattgctatagcttg--ttttgtgata--aatgctaatgaattgatcaatccttg--tttaccaatgcagATCGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATCGTG

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G038028_T01 (Zea mays), 3'ss of exon 6
---ctgttttagtgg--ttttaaaagaat-tattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
      ||    ||     || ||    |  ||| |  ||     || |||  ||||||| ||  | | ||     | |    || |  ||  | | |  |  ||||| |||||||  ||||| |||||  |||| || ||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| |||||  | |
tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttg--ttttgtgata--aatgctaatgaattgatcaatccttg--tttaccaatgcagATCGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G038313_T01 (Zea mays), 3'ss of exon 1
-----ctgttttagtggttttaaaagaattattctacttttggaagtttgaattttgtggta-tgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
         || ||  |   |     |  | | | ||||||     | |    | |   ||  | | | ||  |  ||||   || |  ||  | |    |  |||||||||||||  ||||| |||||  |||| || ||||||||||| |||||||||||||| ||||||||  | |||||||| || || || |||||  | |
agatcaaaattcagatggaatgttgaagctgtgc-acttttattgttatagcctcttctgtgctaaatgctaacgaacta---aatccttg--tttaacaatgcagATTGGTCCTGACCAGATTGAAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCCTGGGCTGCTGAGTACCTGTACCAGTATCGTG

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G105461_T01 (Zea mays), 3'ss of exon 2
ctgttttagtggttttaaaagaattattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG---------------
  |      | || | |    |  || ||   |   |    |  |||| | |     || || |||  |  || | |      |   | | || | | |   | | | ||         ||||  |||| || ||||||||||| |||||||||||||| |||||||| || |||||||| || ||||| |||||  | |               
-ggcacagatagtctcatctca--tagtcagatccagcctctccgaatctggccaggtgtgttctggtttgctctat---ttttttatatacttatataatatagcCTTG---------AAGCTCTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTGCTTTGTGCACAAACA

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G094083_T01 (Zea mays), 3'ss of exon 8
---ctgttttagtgg--ttttaaaagaat-tattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
      ||    ||     || ||    |  ||| |  ||     || |||  ||||||| ||  | | ||     | |    || |  ||  | | |  |  ||||| |||| ||  ||||| |||||  |||| || |||||| |||| |||||||||||||| |||||||| || |||||||| || ||||| |||||  | |
tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttg--ttttgtgata--aatgctaatgaattgatcaatccttg--tttaccaatgcagATCGGTCTTGACCAGATTGAAGCTCTGTATCAGTATGCCCAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGCTGATTACCTTTACCAGTATGGTG

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G156333_T01 (Zea mays), 3'ss of exon 4
---ctgttttagtgg--ttttaaaagaat-tattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
      ||    ||     || ||    |  ||| |  ||     || |||  ||||||| ||  | | ||     | |    || |  ||  | | |  |  ||||| | |||||  ||||| ||||   |||| || ||||||||||| |||||||||||||| |||||||| || |||| ||| || ||||| |||||  | |
tcaaaattcagatgaaacgttgaagctgtgcatttttattgctatagcttg--ttttgtgata--aatgctaatgaattgatcaatccttg--tttaccaatgcagATAGTTCCTGACCAGATTGAAGTTGTGTATCAGTATGCCAAATTTCAGTTTGAGTGTGGTAACTACTCAGGGGCTGTTGATTACCTTTACCAGTATCGTG

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G57290.1 (Arabidopsis thaliana), 3'ss of exon 2
ctgttttagtggttttaaaagaattattctacttttggaagt----ttgaattttg---tggtatgagtcctgtctgac-tatgtaaacaatgattc--tgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
  ||| |  |     | |   | || ||  | |||  ||| |    |  |  ||||   | || || ||  |||   ||  |  |     |||  |   ||    | ||||||||||| |  ||||| || || |||||||| || ||||| || |||||||| ||||| ||||| |||||||||||||| |||||||| ||||||||  
--gttgtgatttggatgattaagttgtttaattttgtgaaatgttatccagatttggttttgtttgtgtattgtggaacacaaatcttatatggcttggtgtcttatcagATTGGTCCAGACCAGATTGAGGCTTTGTACCAGTACGCCAAGTTTCAGTTTGAATGTGGCAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACAGGA

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0252g00070.t01 (Vitis vinifera), 3'ss of exon 2
--ctgttttagtggttttaaaagaattattctacttttggaagtttgaattttgtggt--atgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
  ||||||| || ||| ||       || | |       ||| | |   ||||  |||  ||  | | |     | ||| |      |   | | ||||  |||||||| |  |  |||||||| || || || || ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| |
tcctgtttttgttgttgtattgttgctaatttg---acagaattctaggtttttgggtctatttggcttacaaaattatatcccttttttcttttctgac-cagATTGGCCAGGAGCAGATAGAGGCATTATATCAGTATGCCAAATTTCAGTTTGAATGTGGAAACTACTCTGGTGCTGCTGATTACCTGTATCAGTACAGGG

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S73_26V6.1 (Physcomitrella patens), 3'ss of exon 2
ctgttttagtggttttaaaaga--attattctacttttggaagtttgaattttgtggtatgagtcctg---tctgactatgtaaacaatgattctgctgaa-acagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
     |        |||  | |      ||| |    | |   | ||   |  |   | ||| |   |   ||||||||  |         |||| ||      |||| ||| |||  || || || ||  | ||||| ||||| || ||||||||||||||||||||||| || |||||  ||||||| || ||||||||  |  
----atcgaccaccttatgacatcgcatttccatgccttgccatctg--ctccgatatgtgactttggaggtctgactacatcgtatgaatttcttctctttgtagATCGGTTCTGATCAAATTGAGGCTCTTTACCAGTATGCGAAGTTCCAGTTTGAGTGTGGAAACTATTCAGGTGCCTCTGACTACCTCTATCAGTATCGCA

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S363_21V6.2 (Physcomitrella patens), 3'ss of exon 2
ctgttttagtggttttaaaagaattattctac-ttttggaa-----gtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
   || || |   |   | |      ||| || | |||  |     || || ||       ||| ||||           | ||||   ||||| |        |||| ||| |||  || || || ||  |||| || |||||||| |||||||||||||| ||||||||||| |||||  | ||||| || ||| ||||  | |
--attgtaatatgtagcatatcgcatttcaacgtcttgctacctccgtgtggatgccacattataagtctgacagtttcgtctaaattgtgattgttt----gtagATCGGTTCTGAGCAAATCGAGGCTCTGTATCAGTATGCCAAGTTCCAGTTTGAGTGCGGAAACTACTCGGGTGCATCCGACTACCTGTATGAGTATCGCG

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S9_109V6.1 (Physcomitrella patens), 3'ss of exon 2
-ctgttttagtggttttaa--aagaattattctacttttggaagtttgaattttgtggtat--gagtcctgtctgactatgtaa--acaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
 | |    |||   |  ||  ||||     | ||   | || | ||||   ||||   |||  ||    |   | ||| ||  |   |||||  | | |      |||||||  |||  || ||||| ||  | || || |||||||| || ||||| ||||||||||| |||||||||||  |||| ||||| ||||||||  |  
acaggaaaagtttctacaattaagagcggctttagggt-ggtaatttggcctttgctctatctgatgaatacttaactctggtactgcaatggattttc------agATTGGGTCTGAGCAAATAGAGGCCCTCTATCATTATGCCAAGTTTCAGTTCGAGTGTGGAAATTACTCTGGTGCATCTGATTATCTGTATCAGTATCGGA

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ06230 (Selaginella moellendorffii), 3'ss of exon 2
ctgttttagtggttttaaaagaattattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
                             |||||| |    ||||  || |    | |||||   | ||||  |     || ||  |||| ||    ||||||||||| |  || || || ||| | |||||||| || || ||||||||||||||||| |||||||| || || || || | ||| || |||||  |  
----------------------------gtacttt-gtttctttggtttct----tgtgagtttaggctgagcac---caccattcttcttcttcg-cagATTGGTCCCGAGCACATCGATGCGCTCTACCAATACGCAAAGTTCCAGTTTGAGTGTGGCAACTACTCGGGAGCCGCGGATTTTCTCTACCAGTATCGGA

upper sequence: GLYMA10G16090.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ05347 (Selaginella moellendorffii), 3'ss of exon 2
ctgttttagtggttttaaaagaattattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
                                            | | |||||    |  ||    | |  |       || ||  |||| ||    ||||||||||| |  || || || ||| | |||||||| || || ||||||||||||||||| |||||||| || || || || | ||| || |||||  |  
--------------------------------------------gtactttgtttctttggtttcttgtagcacc----accattcttcttcttcg-cagATTGGTCCCGAGCACATCGATGCGCTCTACCAATACGCAAAGTTCCAGTTTGAGTGTGGCAACTACTCGGGAGCCGCGGATTTTCTCTACCAGTATCGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274704|gb|BF325039.1|BF325039
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|7147523|gb|AW509445.1|AW509445
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGA-CCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|209696602|gb|BW666924.1|BW666924
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|7284976|gb|AW597463.1|AW597463
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|298198687|gb|HO042050.1|HO042050
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|254348331|gb|GR852010.1|GR852010
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|254316955|gb|GR828492.1|GR828492
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|209697044|gb|BW667034.1|BW667034
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|298167046|gb|HO010485.1|HO010485
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|298178685|gb|HO024420.1|HO024420
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|6666245|gb|AW277704.1|AW277704
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|209707121|gb|BW661575.1|BW661575
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|13240397|gb|BG359706.1|BG359706
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|209703907|gb|BW661597.1|BW661597
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|7284217|gb|AW596813.1|AW596813
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|209721328|gb|BW665794.1|BW665794
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|7588257|gb|AW704056.1|AW704056
EST:     GGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: GGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|15204029|gb|BI426797.1|BI426797
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
EST: gi|298181436|gb|HO022875.1|HO022875
EST:     TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAG                         ATTGGTCCCGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT
genomic: TCCGAGCGGACAAGCAGTACAATCTCCAGATGCTCAACGACCGATATCAGgtttagggtt ... gctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG
                    gtctgac  putative branch site (score: 3)
                                         ttctgct  putative PPT
                           tatgtaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctgttttagtggttttaaaagaattattctacttttggaagtttgaattttgtggtatgagtcctgtctgactatgtaaacaatgattctgctgaaacagATTGGTCCTGCACAGATAGAAGCGTTGTACCAATATGCCAAATTCCAGTTTGAGTGTGGAAACTACTCTGGTGCTGCTGACTATCTTTATCAGTACAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - -agtggtt
- - - - - - - - aaaagaa
- - - - - - - - - - - - - - - -cttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgta