1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtacaacagcaaagcaaaatgaaagattagaatttcaggatactttagcattgtcctggaaatttacaattcagttgcttacttgttttctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG
species | Glycine max |
transcript | GLYMA10G12350.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|193556711|gb|FK511920.1|FK511920
genomic: AGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: GAAGAAAAACGGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGACT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATEST: gi|193479469|gb|FK444254.1|FK444254
genomic: GAAGAAAAAC-GGGCCGTTTATGATCAGACTGGTTTTGTTGATGATG-CTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAAT
EST: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|193343445|gb|FK307425.1|FK307425
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: ATGAAG-AAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|16346108|gb|BI971703.1|BI971703
genomic: ATGAAGAAAAACGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: GACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGEST: gi|208101594|gb|GD899555.1|GD899555
genomic: GACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATG
EST: TGAAGAAAAACGGGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCT GAACTTGCAGGGGATGTTGTT
genomic: TGAAGAAAAAC-GGGCCGTTTATGATCAGACTGGTTTTGTTGATGATGCTgtaagtgttt ... ctaaaatcagGAACTTGCAGGGGATGTTGTT
ttagcattgtcctggaaatttacaattcagttgcttacttgttttctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG
ttctaaa putative branch site (score: 2)
cttacttgttttct CT-rich tract
aaatttacaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtacaacagcaaagcaaaatgaaagattagaatttcaggatactttagcattgtcctggaaatttacaattcagttgcttacttgttttctaaaatcagGAACTTGCAGGGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - caacagc
- - - - - - aagcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagttgc