1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtttgtctctatgaaatttgtttttggagccagtgtaatttcttctttcctttattactatgctaacttggttttgttgttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG
species | Glycine max |
transcript | GLYMA10G11610.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAG GATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGAEST: gi|208063869|gb|GD864669.1|GD864669
genomic: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAGgtttgtctct ... ttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGA
EST: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAG GATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTAGACGTGAGTCTAAGTEST: gi|193516385|gb|FK476419.1|FK476419
genomic: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAGgtttgtctct ... ttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTT-G-CGTGAGTCTAAGT
EST: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAG GATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGAEST: gi|193337171|gb|FK302467.1|FK302467
genomic: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAGgtttgtctct ... ttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGA
EST: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAG GATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGAEST: gi|207811802|gb|GD783051.1|GD783051
genomic: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAGgtttgtctct ... ttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGA
EST: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAG GATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGAEST: gi|193641503|gb|FK593253.1|FK593253
genomic: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAGgtttgtctct ... ttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGA
EST: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAG GATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGAEST: gi|193477133|gb|FK443088.1|FK443088
genomic: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAGgtttgtctct ... ttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGA
EST: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAG GATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGAEST: gi|193645214|gb|FK593430.1|FK593430
genomic: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAGgtttgtctct ... ttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGA
EST: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAG GATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGACGTGAGTCTAAGTGEST: gi|193403888|gb|FK366138.1|FK366138
genomic: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAGgtttgtctct ... ttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTG-CGTGAGTCTAAGTG
EST: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAG GATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGAEST: gi|193463850|gb|FK427830.1|FK427830
genomic: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAGgtttgtctct ... ttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGA
EST: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAG GATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGA
genomic: GATCTTTACCTCAAATCAGTGGAGAAATCCAGACCAGTGCCTCTTCCAAGgtttgtctct ... ttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGA
gtaatttcttctttcctttattactatgctaacttggttttgttgttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG
tgctaac putative branch site (score: 1)
tttattactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctctatgaaatttgtttttggagccagtgtaatttcttctttcctttattactatgctaacttggttttgttgttgttaatagGATTCACGCAAAAGTAGGTGAAAGGTGGGAGATTTGCGTGAGTCTAAGTGATGGGCAGTTTCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT