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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagctttttcttttgaatatagtatttcaacattgtggtcacaatcataatccatactaagaaccaactgaacctgtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGATGGGTGTTCTAAATGCTCAAGCAACTCGAAAGCTGTCTGTCTCAACAATC

Basic information

species Glycine max
transcript GLYMA10G10270.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5770452|gb|AI973626.1|AI973626
EST:     CTCCTGCTATTGTTGCAAACGGCACATATACTGTTACCAGTTCTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTG
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTG
EST: gi|298174172|gb|HO017508.1|HO017508
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|298184144|gb|HO029357.1|HO029357
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|208237649|gb|GE028433.1|GE028433
EST:     GCACATATACTGTTACCAG-TTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: GCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|192294605|gb|FG986454.1|FG986454
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|298180808|gb|HO022247.1|HO022247
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|7796558|gb|AW781955.1|AW781955
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGATATACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCTAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|20448531|gb|BQ252655.1|BQ252655
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|57575725|gb|CX548700.1|CX548700
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|7284325|gb|AW596919.1|AW596919
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|57575565|gb|CX548540.1|CX548540
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|192326820|gb|FK018917.1|FK018917
EST:     CTCCTGCTTTCGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|14991159|gb|BI316832.1|BI316832
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
EST: gi|298179682|gb|HO024897.1|HO024897
EST:     CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTT                         GTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT
genomic: CTCCTGCTTTTGTTGCAAACGGCACATATACTGTTACCAGTTTTACTCTTgtaaggagct ... gtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtggtcacaatcataatccatactaagaaccaactgaacctgtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGATGGGTGTTCTAAATGCTCAAGCAACTCGAAAGCTGTCTGTCTCAACAATC
                                          cctgtctct  CT-rich tract
            aatcataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaggagctttttcttttgaatatagtatttcaacattgtggtcacaatcataatccatactaagaaccaactgaacctgtctctgcagGTCCTTGAGTTTAAGAGGGGCAGGCTGCAAAATTTATATTGGAAAAGAGATGGGTGTTCTAAATGCTCAAGCAACTCGAAAGCTGTCTGTCTCAACAATC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG