1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catattttgattttttttttcattttttttgtttctttccggatgtgattgtaaactatgaaagcataacactaacttatgctaagttttcatttttcagTGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATATTTTCATAGTAACTCGGAAATTCAAGCTGGTGCTGACGGCCTTCAAACCC
species | Glycine max |
transcript | GLYMA10G10040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCAAACCAGATTCGCAACACTGCAAG TGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATATEST: gi|6667522|gb|AW278973.1|AW278973
genomic: CTCCAAACCAGATTCGCAACACTGCAAGgtacacctac ... catttttcagTGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATAT
EST: ATGGGTTGATCCAAAAATCACTCTCCAAACCAGATTCGCAACACTGCAAG TGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATATEST: gi|15285476|gb|BI469367.1|BI469367
genomic: ATGGGTTGATCCAAAAATCACTCTCCAAACCAGATTCGCAACACTGCAAGgtacacctac ... catttttcagTGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATAT
EST: ATGGGTTGATCCAAAAATCACTCTCCAAACCAGATTCGCAACACTGCAAG TGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATAT
genomic: ATGGGTTGATCCAAAAATCACTCTCCAAACCAGATTCGCAACACTGCAAGgtacacctac ... catttttcagTGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATAT
tgattgtaaactatgaaagcataacactaacttatgctaagttttcatttttcagTGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATATTTTCATAGTAACTCGGAAATTCAAGCTGGTGCTGACGGCCTTCAAACCC
cactaac putative branch site (score: 1)
ttttcatttttc putative PPT
taagttttcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catattttgattttttttttcattttttttgtttctttccggatgtgattgtaaactatgaaagcataacactaacttatgctaagttttcatttttcagTGTGAACTAGTAACAAAAGCAAAAGAAAGATTTTCTCCGATGGCGACATATTTTCATAGTAACTCGGAAATTCAAGCTGGTGCTGACGGCCTTCAAACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaag