1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttaaatcaaagttttagtttttaattgcttttttttaacctagttgtattgtcttaattctaatcattgatttttgttaattttaatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGGCACAGATGAAGAAGAC
species | Glycine max |
transcript | GLYMA10G10000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAG GCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGEST: gi|9987770|gb|BE661878.1|BE661878
genomic: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAGgtttaaatca ... aatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAG
EST: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAG GCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGEST: gi|15813808|gb|BI786083.1|BI786083
genomic: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAGgtttaaatca ... aatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAG
EST: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGCTCTGCAATTGCCCAGAAG GCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGEST: gi|14205367|gb|BG839045.1|BG839045
genomic: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAGgtttaaatca ... aatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAG
EST: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAN GCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGEST: gi|151397650|gb|EV267523.1|EV267523
genomic: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAGgtttaaatca ... aatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAG
EST: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAG GCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGEST: gi|151408011|gb|EV277826.1|EV277826
genomic: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAGgtttaaatca ... aatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAG
EST: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGCTCTGCAATTGCCCAGAAG GCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGEST: gi|24205496|gb|BU964749.1|BU964749
genomic: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAGgtttaaatca ... aatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAG
EST: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGCTCTGCAATTGCCCAGAAG GCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGEST: gi|298177257|gb|HO023504.1|HO023504
genomic: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAGgtttaaatca ... aatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAG
EST: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAG GCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGEST: gi|14206051|gb|BG839729.1|BG839729
genomic: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAGgtttaaatca ... aatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAG
EST: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAN GCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAG
genomic: GCAAGAAAGAGGCGCGTCAAGTTCACAAACGTTCTTCAATTGCCCAGAAGgtttaaatca ... aatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAG
ctagttgtattgtcttaattctaatcattgatttttgttaattttaatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGGCACAGATGAAGAAGAC
tcttaattctaatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaaatcaaagttttagtttttaattgcttttttttaacctagttgtattgtcttaattctaatcattgatttttgttaattttaatggaacagGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGGCACAGATGAAGAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG