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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttttatatataatgttcttgcttgcattttgtttgttgttaaaagcctgcttgcagatcctataattgtgttcttctcatctatctcttctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAGTCAACATGA

Basic information

species Glycine max
transcript GLYMA10G09280.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G09280.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 3'ss of exon 2
tcttttatatataatgttcttgcttgcattttgtttgttg-ttaaaagcctgcttgcagatcctataattgtgttcttctcatctatctc-ttctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAGTCAACATGA
  |   ||  |   |  | ||| |    |||||  | |||  |    ||     || | | | || ||     ||    || |||   |  || | | ||||||||||||||||||  | || ||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||| || |||||||||||  |||||||||
--tagaatgaaatgtactattgttgaggttttggattttgacttcttgctgatatggatagcttacaagcacattacaatcttctcctttattttttttcagACTGTACATGAAGGTCGCATATATCAGTTGAAGCTGTTCTGTGACAAAGATTATCCAGAGAAGCCACCAAGTGTCCGTTTTCATTCACGGATCAACATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27808883|gb|CB063305.1|CB063305
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: gi|6069578|gb|AW099241.1|AW099241
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: gi|207841754|gb|GD813638.1|GD813638
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAATTAGAAAGACTAGTTTTAGTGATA
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATT-GAA-G-CT-GTTTT-GTGATA
EST: gi|4314038|gb|AI461157.1|AI461157
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: gi|209724423|gb|BW662954.1|BW662954
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: gi|13563351|gb|BG551571.1|BG551571
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAAT                         ACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGAC
EST: gi|208206857|gb|GE002550.1|GE002550
EST:     ATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCC-ATAAT                         ACTGTACAATGAAGGAAGAATTT
genomic: ATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtattt ... tctctgtcagACTGTACA-TGAAGGAAGAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcctgcttgcagatcctataattgtgttcttctcatctatctcttctctgtcagACTGTACATGAAGGAAGAATTTATCAATTGAAGCTGTTTTGTGATAAAGACTACCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGAGTCAACATGA
                      ttgtgttcttctcatc  CT-rich tract
                 tataattgt  TA-rich tract