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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA

Basic information

species Glycine max
transcript GLYMA10G07680.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07680.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g59990.2 (Oryza sativa), 3'ss of exon 3
gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA
                                        |     | |||    || || |||           | | ||   || || || || |   || |||| |        ||||   |  | | | | | ||         | |||||||| |||||||| ||||||||||| ||| | || ||||||||| |  |||||||  | ||||| |||||||| || |||||||| ||||| |||||||
---------------------------------------gtaaccctctttgtccattgaagtttgaaa------gtccaatctatgattaagttagggggtcttttgc--------atacaatttcaagtgttctcttc--------tgcagGTTTTTCTGTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCCAAGCTTACCTGGACAGCTATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA10G07680.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os07g12250.1 (Oryza sativa), 3'ss of exon 3
gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaa-tata-cagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA
                                                                 || |||||||| ||| ||    |   || |     ||     |  || ||   || |  | |     |||| |||| | || |||| ||||| ||||||||| | |||||||| || ||| | || ||||||||| |  |||||||| | ||||| || ||||| || |||||||||||||| |||||||
----------------------------------------------------------------gtgagtactttggcaagatggatacacatgt-----gtaggacaaaagctaacctatt--tctgatcaatttctttggtaaactatatcagGTGTTCCTGTTTTCAAACTCGAAGTGCAAGCGCTACTTCCACAACCGTCTGAAGCCAGCCAAGCTTACATGGACAGCCATGTACAGAAAGCAGCACAAGA

upper sequence: GLYMA10G07680.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G074898_T01 (Zea mays), 3'ss of exon 3
gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA
                                                                 |   | || | |||   |    |  |  ||||   | ||| ||     |  | |  ||  | |||  ||   | ||||   | |  |||||||||| ||||| ||||||||||| ||| | || ||||||||| |  |||||||  ||||||| |||||||| ||||||||||| ||||| |||||||
---------------------------------------------------------------gttacttgctgttacattttttgtaataggtttgtaagctttatatagcatgatcttatggca-aggaaatacatctgtt---tttgtagGTTTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA10G07680.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G110328_T04 (Zea mays), 3'ss of exon 3
gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA
                                                                    ||   | |  |  || ||  |       ||| || |   | ||   | | | || ||  |  | |  |   | |    | || |||||||||| ||||| ||||| ||||| ||| | || ||||||||| |  |||||||  ||||||| |||||||| ||||||||||| ||||| |||||||
--------------------------------------------------------------------gttactagctatcat-atttttgtaagagat-gtctaagattataaaatcttcttatggaaagaaactacatat--gttttatagGTTTTCCTTTTTGCCAACTCAAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA10G07680.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G142640_T03 (Zea mays), 3'ss of exon 2
gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA
                                                                 |     || | |||   | || |   ||||  ||    || ||  |  | ||    || ||| |        |   ||   | || |||| ||||| ||||| ||||||||||| ||| | || ||||||||| |  |||||||  ||||||| |||||||| ||||||||||| ||||| |||||||
---------------------------------------------------------------gttactcgctgttacatttttataagagattt--ataagcttatagaaaatgtt----tgttatggaaagaacttacatttgttctatagGTCTTCCTTTTTGCCAACTCGAAATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTACCTGGACAGCAATGTACAGGAAGCAGCACAAGA

upper sequence: GLYMA10G07680.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G53020.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA
                                                        ||| | || | || |  || |   |||||  ||  |||| | |  |  ||| | | |  ||    |    |     | | ||||||    | | ||||||||| |||||  |||||| |||||||||||||| ||||| |||| |||||||||||| |||||  | |||||||| ||||||||||||||||||||||
------------------------------------------------------gttggttcttttatgaatcttcagctaatcaa-attgattt-gtttatactttgcaaatgttttggttttagtcttttaatggtttgtattgttttcagGTTTTCTTGTTTCTTAACTCAAAATGTAAGAGGTACTTCCATAACAAGTTGAAGCCATCCAAGCTTGCATGGACTGCCATGTACAGAAAGCAACACAAGA

upper sequence: GLYMA10G07680.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G36620.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA
                                     ||| | | || |  | | |||  || |||   |   || | || |   | |||  || | |   | | |   || | |||| |      | ||   |||  | |||| ||    |||| ||  |||||   ||||| ||||||||||||||||||||||||| |||||||||||| |||||   ||||||||| |||||| ||||||| |||||||
-------------------------------------gtactttattttggttaaatgtgtgctctacttg--ttaagaagagtcttatctgttgttactatgtatctgtattgattaaatcatctttggt--ttttatggttgtat---tagGTGTTTTTGTTTCTCAACTCCAAATGTAAGAGGTATTTCCACAACAAGTTGAAGCCATCTAAGCTTTGCTGGACTGCTATGTACCGAAAGCAGCACAAGA

upper sequence: GLYMA10G07680.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g04210.t01 (Vitis vinifera), 3'ss of exon 2
---------------gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA
                | | |   ||||||    ||   ||| |  |   |   | | | |    |  || |  || |||| | | | ||| |    |     |||     | | |   | |  || || ||  | ||| ||     | ||  |      ||||  |||| || || ||||| || || ||||| |||||||| ||||||||| || |||||||||||||||| |||||||| || |||||||| |||||||| || |
gtaattttatagctcattaaaatttatgttctgtatcagattattagccaactaaatttcta--ctgaatgttaatcttctttcttcattgtcttggttgggctcagg---ggttgacctcttgtacttgtttaattgacatta---aattactctcaatatatttagGTGTTTCTATTTGCCAATTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAACATAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204099|gb|BE330323.1|BE330323
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|6848156|gb|AW350446.1|AW350446
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209729426|gb|BW663687.1|BW663687
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|208041349|gb|GD838606.1|GD838606
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|298178215|gb|HO023950.1|HO023950
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|192311451|gb|FK005182.1|FK005182
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|298184907|gb|HO030120.1|HO030120
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAGTGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|254338509|gb|GR849927.1|GR849927
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209725927|gb|BW654752.1|BW654752
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|298170088|gb|HO018712.1|HO018712
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|254338510|gb|GR849928.1|GR849928
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209725928|gb|BW654753.1|BW654753
EST:     ACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: ACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|254330682|gb|GR841947.1|GR841947
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|254326104|gb|GR840696.1|GR840696
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|298174457|gb|HO014602.1|HO014602
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|254319112|gb|GR828840.1|GR828840
EST:     GGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: GGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|58015011|gb|CX701753.1|CX701753
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209712106|gb|BW676723.1|BW676723
EST:     ACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTCTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: ACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|208303757|gb|GE107802.1|GE107802
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|38193719|gb|CF922925.1|CF922925
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|298191792|gb|HO035874.1|HO035874
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|4397663|gb|AI496660.1|AI496660
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|57574313|gb|CX547288.1|CX547288
EST:     CCAAGATTTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|254331670|gb|GR846087.1|GR846087
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|192327707|gb|FK020698.1|FK020698
EST:     AAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: AAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|151409976|gb|EV279784.1|EV279784
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|38192454|gb|CF921660.1|CF921660
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209717026|gb|BW682314.1|BW682314
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|213616688|gb|DB971227.1|DB971227
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|19452701|gb|BM954111.1|BM954111
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|7685149|gb|AW755797.1|AW755797
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|254330683|gb|GR841948.1|GR841948
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|207823078|gb|GD794887.1|GD794887
EST:     TTCGTGGAGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: TTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|151411689|gb|EV281500.1|EV281500
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|41146259|gb|CK606470.1|CK606470
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209723426|gb|BW651354.1|BW651354
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|193409898|gb|FK371298.1|FK371298
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|9203421|gb|BE329574.1|BE329574
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|17400652|gb|BM177434.1|BM177434
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|10709290|gb|BF009014.1|BF009014
EST:     AAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: AAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|120532385|gb|EH260518.1|EH260518
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|192311450|gb|FK005181.1|FK005181
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209729425|gb|BW663686.1|BW663686
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|9986848|gb|BE660956.1|BE660956
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|41145786|gb|CK605997.1|CK605997
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|4396328|gb|AI495325.1|AI495325
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|192322283|gb|FK014524.1|FK014524
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|193554450|gb|FK516379.1|FK516379
EST:     AAGATCTACCCAGGGAAAGGCATACAAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: AAGATCTACCCAGGGAAAGGCAT-C-AGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209713439|gb|BW681480.1|BW681480
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|208198276|gb|GD996417.1|GD996417
EST:     CGTGGAGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|209712105|gb|BW676722.1|BW676722
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|11414163|gb|BF426174.1|BF426174
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|213603022|gb|DB958593.1|DB958593
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|23732092|gb|BU764201.1|BU764201
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|298179313|gb|HO027784.1|HO027784
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|7042350|gb|AW472244.1|AW472244
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|213607624|gb|DB958643.1|DB958643
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|58025017|gb|CX711758.1|CX711758
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|298187108|gb|HO034257.1|HO034257
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
EST: gi|12774597|gb|BG239524.1|BG239524
EST:     CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAG                         GTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG
genomic: CCAAGATCTACCCAGGGAAAGGCATCAGATTTGTTCGTGGTGATTCTCAGgtgacataat ... gaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA
                    tactgat  putative branch site (score: 2)
     ttttactagttattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgacataatatgtttctcattgaattttgggttgatgtattgtgttattttgatatggatgttctgtgtactttgacaaaatcatcatcaattttgatcgttttttactagttattatactgatataggggatttgtttgttgaatatacagGTTTTCCTGTTTGCTAACTCGAAATGTAAGAGGTATTTCCACAACAGGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTACAGAAAGCAACACAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA