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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttacctgtaatatgtaaaagtgaattctgtaatgcatatactcctgaagggacataaagttgacttaaagaaaatgttaagactgaaattgatctaataagaactgacatttgtatctgtaaaccttataaactgtaatctgtggaatattaccgtgcagATACATGGTATTTCGAGGAGCAAACAAGCAAAACCATGTATTCAAAAAGAATCCAAAGGCTCGTATTTGGGGTAAGCCTCCAAAAGTCATTGGCGGAAAG

Basic information

species Glycine max
transcript GLYMA10G07580.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07580.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g03930.t01 (Vitis vinifera), 3'ss of exon 10
gtaacttacctgtaatatgtaaaagtgaattctgtaatgcatatactcctgaagggacataaagttgacttaaagaaaatgttaagactgaaattgatctaataagaactgacatttgtatctgtaaaccttataaactgtaatctgtggaatattaccgtgcagATACATGGTATTTCGAGGAGCAAACAAGCAAAACCATGTATTCAAAAAGAATCCAAAGGCTCGTATTTGGGGTAAGCCTCCAAAAGTCATTGGCGGAAAG
                                                               || |   |  |   | |  ||    ||  |||   |  |      |  || ||| |  | |   ||||  |||| ||  |  | |  | ||  |  | |||| ||    || ||| |||| || ||||| ||||| || || || || |||||||| ||||| | |||||||||||||||||||| ||| ||||| ||||||
---------------------------------------------------------------gtaggtctctatcgact--tatatttggcatttggcagactcattccaac-tttttcccagagcacctgctaaaatgacacttttata-taaaatggggcagGTATCAAGTGTTTAGAGGGGCTAACAAACAAAAGCACGTGTTTAAGAAGAATCCCAAGGCACTTATTTGGGGTAAGCCTCCAAGAGTTATTGGGGGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15199760|gb|BI423996.1|BI423996
EST:     GAGTCAACACCAGCTGCCATTGTAGCTAATTGCTTTGTCTTCCTGATTGG                         ATACATGGTATTTCGAGGAGCAAACAAGCAAAACCATGTATTCAAAAAGAA
genomic: GAGTCAACACCAGCTGCCATTGTAGCTAATTGCTTTGTCTTCCTGATTGGgtaacttacc ... taccgtgcagATACATGGTATTTCGAGGAGCAAACAAGCAAAACCATGTATTCAAAAAGAA
EST: gi|15199746|gb|BI423989.1|BI423989
EST:     GAGTCAACACCAGCTGCCATTGTAGCTAATTGCTTTGTCTTCCTGATTGG                         ATACATGGTATTTCGAGGAGCAAACAAGCAAAACCATGTATTCAAAAAGAA
genomic: GAGTCAACACCAGCTGCCATTGTAGCTAATTGCTTTGTCTTCCTGATTGGgtaacttacc ... taccgtgcagATACATGGTATTTCGAGGAGCAAACAAGCAAAACCATGTATTCAAAAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacatttgtatctgtaaaccttataaactgtaatctgtggaatattaccgtgcagATACATGGTATTTCGAGGAGCAAACAAGCAAAACCATGTATTCAAAAAGAATCCAAAGGCTCGTATTTGGGGTAAGCCTCCAAAAGTCATTGGCGGAAAG
 aactgac  putative branch site (score: 2)
                    ttataaactgtaat  TA-rich tract