1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatagttgctcgaatctttagcttctagttcatgagttggaccatttttaagttctgggttcatttgaattagatgcaaacaaatataatgaaatatttcttatagggtctttctgttgaatcactttccattgaccaaaatggttgattgaagtgttatattaataacattacatccatattgcagCTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGCAAGGAATCATTCTTG
species | Glycine max |
transcript | GLYMA10G06780.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATGCTCACTGTAGGAGGGAAGAGATTGAAACTAACTATTTGGGACACTG CTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGCEST: gi|298191339|gb|HO038818.1|HO038818
genomic: GATGCTCACTGTAGGAGGGAAGAGATTGAAACTAACTATTTGGGACACTGgtaatagttg ... catattgcagCTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGC
EST: GATGCTCACTGTAGGAGGGAAGAGATTGAAACTAACTATTTGGGACACTG CTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGCEST: gi|13311878|gb|BG405529.1|BG405529
genomic: GATGCTCACTGTAGGAGGGAAGAGATTGAAACTAACTATTTGGGACACTGgtaatagttg ... catattgcagCTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGC
EST: GATGCTCACTGTAGGAGGGAAGAGATTGAAACTAACTATNTGGGACACTG CTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGC
genomic: GATGCTCACTGTAGGAGGGAAGAGATTGAAACTAACTATTTGGGACACTGgtaatagttg ... catattgcagCTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGC
tgaccaaaatggttgattgaagtgttatattaataacattacatccatattgcagCTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGCAAGGAATCATTCTTG
taataac putative branch site (score: 1)
ttatattaataacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatagttgctcgaatctttagcttctagttcatgagttggaccatttttaagttctgggttcatttgaattagatgcaaacaaatataatgaaatatttcttatagggtctttctgttgaatcactttccattgaccaaaatggttgattgaagtgttatattaataacattacatccatattgcagCTGGACAGGAAAGGTTCAGAACGCTAACTAGTTCTTACTATAGAGGAGCGCAAGGAATCATTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA