1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcctattcaaaatgaagttacgcttacaactgaattactgagttcgtgagttgagggaagaaagaatgtcaatgatattcaattgatgctttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTCAAGTTAAGAGTTTTGGCCCAGAACTATCCTGTTACGCCAG
species | Glycine max |
transcript | GLYMA10G06430.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAG GAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTCEST: gi|151409822|gb|EV279630.1|EV279630
genomic: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAGgtctcgtgtt ... ttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
EST: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAG GAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTCEST: gi|298187545|gb|HO034694.1|HO034694
genomic: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAGgtctcgtgtt ... ttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
EST: AGGAGCTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAG GAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTCEST: gi|14126593|gb|BG791031.1|BG791031
genomic: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAGgtctcgtgtt ... ttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
EST: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAG GAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTCEST: gi|151402284|gb|EV272097.1|EV272097
genomic: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAGgtctcgtgtt ... ttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
EST: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAG GAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
genomic: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAGgtctcgtgtt ... ttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
gtgagttgagggaagaaagaatgtcaatgatattcaattgatgctttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTCAAGTTAAGAGTTTTGGCCCAGAACTATCCTGTTACGCCAG
aattgat putative branch site (score: 4)
tgctttttct CT-rich tract
aatgatattcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctattcaaaatgaagttacgcttacaactgaattactgagttcgtgagttgagggaagaaagaatgtcaatgatattcaattgatgctttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTCAAGTTAAGAGTTTTGGCCCAGAACTATCCTGTTACGCCAG
- ctattca
- - - - - aatgaag
- - - - - - - - - - - - - caactga
- - - - - - - - - - - - - - - - - - -ctgagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - gagggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct