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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcctattcaaaatgaagttacgcttacaactgaattactgagttcgtgagttgagggaagaaagaatgtcaatgatattcaattgatgctttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTCAAGTTAAGAGTTTTGGCCCAGAACTATCCTGTTACGCCAG

Basic information

species Glycine max
transcript GLYMA10G06430.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168689|gb|HO009619.1|HO009619
EST:     AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAG                         GAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
genomic: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAGgtctcgtgtt ... ttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
EST: gi|298187545|gb|HO034694.1|HO034694
EST:     AGGAGCTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAG                         GAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
genomic: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAGgtctcgtgtt ... ttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
EST: gi|14126593|gb|BG791031.1|BG791031
EST:     AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAG                         GAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
genomic: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAGgtctcgtgtt ... ttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
EST: gi|151402284|gb|EV272097.1|EV272097
EST:     AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAG                         GAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC
genomic: AGGAGTTTAGTACTGTCATTGATGTTGCTGGGTTCCTATCCGATGGACAGgtctcgtgtt ... ttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagttgagggaagaaagaatgtcaatgatattcaattgatgctttttctgcagGAGAAAAGACTAGCAGAAGAGATTGCTGCTCTTGAAGCGGATACTGGATTCAAGTTAAGAGTTTTGGCCCAGAACTATCCTGTTACGCCAG
                                   aattgat  putative branch site (score: 4)
                                         tgctttttct  CT-rich tract
                         aatgatattcaatt  TA-rich tract