1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttattttgatttttgttattattgttacttgcatatattaccgcaactaaatcttttttgtacactgatcaatgctgtcctcttcacgtctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGCTCAATACCGAGCTCAACTAGAGGCTGAGTTTCAAAAGAAAGTGTCAGA
species | Glycine max |
transcript | GLYMA10G06010.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|209706506|gb|BW676080.1|BW676080
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|192294406|gb|FG987335.1|FG987335
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|14206383|gb|BG840061.1|BG840061
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: TGCGAAAAGATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTEST: gi|7042134|gb|AW472028.1|AW472028
genomic: TGCGAAAA-ATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATT
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|151395376|gb|EV265247.1|EV265247
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|209706507|gb|BW676081.1|BW676081
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|192308452|gb|FK002824.1|FK002824
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|208283924|gb|GE082428.1|GE082428
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GATGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|15285912|gb|BI469803.1|BI469803
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|192327388|gb|FK018150.1|FK018150
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|193553486|gb|FK510025.1|FK510025
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: CAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|192325567|gb|FK019423.1|FK019423
genomic: CAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|208266902|gb|GE060967.1|GE060967
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|8283562|gb|BE021121.1|BE021121
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACACCGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|193719310|gb|FK653476.1|FK653476
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: CAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTAEST: gi|58024531|gb|CX711272.1|CX711272
genomic: CAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|209697417|gb|BW675562.1|BW675562
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|192311487|gb|FK005218.1|FK005218
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCGAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|120531416|gb|EH259549.1|EH259549
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|207848740|gb|GD818015.1|GD818015
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGNGATTGEST: gi|192328300|gb|FK020011.1|FK020011
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|192314767|gb|FK006665.1|FK006665
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|208122510|gb|GD923594.1|GD923594
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|12688761|gb|BG155097.1|BG155097
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGANAGAGGGCTGAAAAGGGAGAEST: gi|12688293|gb|BG154629.1|BG154629
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGA-AGA-GGCTGAAAA-GGAG-
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|208222512|gb|GE016995.1|GE016995
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: TTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|19938094|gb|BQ081557.1|BQ081557
genomic: -TTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|192325874|gb|FK016551.1|FK016551
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|208129637|gb|GD928937.1|GD928937
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: AGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|22540338|gb|BU090181.1|BU090181
genomic: AGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|193500498|gb|FK464043.1|FK464043
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAGGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|31460442|gb|CD402410.1|CD402410
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|120492606|gb|EH220773.1|EH220773
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|151401027|gb|EV270841.1|EV270841
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|208312511|gb|GE113807.1|GE113807
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGCGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGEST: gi|207842909|gb|GD815503.1|GD815503
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
EST: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATG AAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGNGATTG
genomic: GTTGGCTGCTGAACAAGAGGCACAACGGATTGTGAATGCTGCGAAAAATGgtatttttat ... ctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTG
aactaaatcttttttgtacactgatcaatgctgtcctcttcacgtctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGCTCAATACCGAGCTCAACTAGAGGCTGAGTTTCAAAAGAAAGTGTCAGA
tcctcttcacgtct CT-rich tract
aatctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattttgatttttgttattattgttacttgcatatattaccgcaactaaatcttttttgtacactgatcaatgctgtcctcttcacgtctattgtaagAAAAATTGGCTAGGTTGAAGCAAGCCAAGGAAGAGGCTGAAAAGGAGATTGCTCAATACCGAGCTCAACTAGAGGCTGAGTTTCAAAAGAAAGTGTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA