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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattggttgggttaggtggatggattgtatttattttgattttattcacgagaggtttcttgttcaatgtagGATCCTGTAAAGTCTATCCACTTCAGTAATTCAAATCCTACGTGCCATGCATTTGATCAGGATTCTAAGGACGGGCATGATTTGATCATTGGCTTGAATA

Basic information

species Glycine max
transcript GLYMA10G05890.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05890.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 3'ss of exon 2
----------------gtatattggttgggttaggtg-gatggattgtatttatt-ttgattttattcacgagaggtttcttgttcaatgtagGATCCTGTAAAGTCTATCCACTTCAGTAATTCAAATCCTACGTGCCATGCATTTGATCAGGATTCTAAGGACGGGCATGATTTGATCATTGGCTTGAATA
                   | ||| ||   | || |  |||    | |  |  || ||  |   ||| | ||||  ||  |||    || |||||||| ||||||||||| ||  |||| |||||||| |||| ||||||||||||| |||  ||| ||||||| || |||||| |  | |||||  ||||  
gtaatcttacctctactcgttttgttttcttaagatttgatttgatctgctggttgtttgtcacatttatgagaaattatttg----atttagGATCCAGTAAAGTCTATACATATCAGCAATTCAAACCCTATGTGCCATGCATTTCATCCAGATGCTAAGGATGGACATGATCTACTTATTGGGCTGAACT

upper sequence: GLYMA10G05890.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 3'ss of exon 2
-----------------gtatattggttg-ggttaggtggatggattgtatttattttgattttattcacgaga----ggttt------cttgttcaatgtagGATCCTGTAAAGTCTATCCACTTCAGTAATTCAAATCCTACGTGCCATGCATTTGATCAGGATTCTAAGGACGGGCATGATTTGATCATTGGCTTGAATA
                  | | ||  ||   || |  ||| || | |||  |  ||||  |||| ||   ||      |||||      ||| ||  ||||||||||| |||||||||||||| |||||||||||||| |||| ||| ||||| ||||||| |||| ||||||| |||||||| ||  | |||||  ||||| 
gtaatttcttcttttctttgttttccttttagtgatttggctgtaatgttctgttttttgttttgttttggaagtaatggtttaggaaacttctttgatgtagGATCCAGTAAAGTCTATCCATTTCAGTAATTCAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGACTTACTTATTGGGCTGAATT

upper sequence: GLYMA10G05890.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 3'ss of exon 2
----------gtatattggttggg--ttaggtggatggattgtatttat--tttgattttattcacgagaggtttcttgttcaatgtagGATCCTGTAAAGTCTATCCACTTCAGTAATTCAAATCCTACGTGCCATGCATTTGATCAGGATTCTAAGGACGGGCATGATTTGATCATTGGCTTGAATA
          || |  ||| || |  ||   |  ||   |  | | |    || || ||   |   ||||||||| || || ||||||||||||  |||||||||| || || |||||||| ||||||   || ||||||||||| | |||| ||||||| || ||||||||| | ||||| |||||| 
gtaatttgatgttttctggctgcggttttaatcaataattcatgtcttgcgttggaattggattttgagaggtttgttttttaatgtagGATCCCATAAAGTCTATACATTTTAGTAATTCGAATCCTGTTTGTCATGCATTTGACCCGGATGCTAAGGATGGACATGATTTGCTTATTGGGTTGAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatggattgtatttattttgattttattcacgagaggtttcttgttcaatgtagGATCCTGTAAAGTCTATCCACTTCAGTAATTCAAATCCTACGTGCCATGCATTTGATCAGGATTCTAAGGACGGGCATGATTTGATCATTGGCTTGAATA
                ttttgat  putative branch site (score: 4)
                                      tttcttgttc  putative PPT
      attgtatttattttga  TA-rich tract