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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaagataaaatttatatttaacctatctcaggtatccaggatgttccttattctgttagcaactgcttttgcagAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACTTCAGAATCAACCTCACAATCTGATAATGCACCACCTCTTCCTCTACCTG

Basic information

species Glycine max
transcript GLYMA10G05720.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213589866|gb|DB959449.1|DB959449
EST:     CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAG                         AATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACT
genomic: CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGgttaagataa ... gcttttgcagAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACT
EST: gi|193374323|gb|FK339303.1|FK339303
EST:     CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAG                         AATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTG
genomic: CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGgttaagataa ... gcttttgcagAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTG
EST: gi|213590595|gb|DB968131.1|DB968131
EST:     CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAG                         AATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACT
genomic: CTACTGTGAAGAAAGCTCTAAGCCCTGAGCCAAAGGAGAAGAACGATCAGgttaagataa ... gcttttgcagAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacctatctcaggtatccaggatgttccttattctgttagcaactgcttttgcagAATTCAAGTAGATCAAAGAAGAAATGGTTTCAGAAGCAAAAATTGCAGACTTCAGAATCAACCTCACAATCTGATAATGCACCACCTCTTCCTCTACCTG
 atttaac  putative branch site (score: 3)
                                           ctgctttt  putative PPT
                            ttattct  TA-rich tract